gagneurlab / OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
☆49Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for OUTRIDER
- ☆24Updated 5 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆63Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆30Updated 6 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆78Updated 4 months ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆32Updated 4 months ago
- IDR☆30Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆45Updated 3 weeks ago
- Ultraperformant reimplementation of SICER☆56Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆72Updated 3 years ago
- Genomic Association Tester☆29Updated last year
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 2 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆49Updated 11 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆76Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆67Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated last month
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆55Updated 4 years ago
- Tutorial Website☆53Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆56Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- Burden testing against public controls☆50Updated 8 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago