gagneurlab / OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
☆49Updated this week
Alternatives and similar repositories for OUTRIDER:
Users that are interested in OUTRIDER are comparing it to the libraries listed below
- ☆25Updated 8 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆62Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated last week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- Genomic Association Tester☆30Updated last year
- Detecting intron retention from RNA-Seq experiments☆54Updated 7 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- IDR☆31Updated last year
- ☆17Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 6 years ago
- A complete tool set for molecular QTL discovery and analysis☆51Updated 10 months ago
- Tutorial Website☆56Updated 4 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆36Updated 7 months ago
- DCC/DAC methylation pipeline source☆55Updated 4 years ago