OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
☆56Feb 11, 2026Updated 2 months ago
Alternatives and similar repositories for OUTRIDER
Users that are interested in OUTRIDER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆165Mar 24, 2026Updated last month
- FRASER - Find RAre Splicing Events in RNA-seq☆55Feb 11, 2026Updated 2 months ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set☆17Aug 9, 2019Updated 6 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆34May 5, 2022Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- GTEx & TOPMed data production and analysis pipelines☆404Sep 14, 2025Updated 7 months ago
- ☆26Feb 15, 2018Updated 8 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- ☆13May 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated last month
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- Software for linkage disequilibrium graphical models☆17Apr 6, 2025Updated last year
- Allele-specific copy number estimation with whole genome sequencing☆23Nov 10, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Unfazed by genomic variant phasing☆27May 26, 2024Updated last year
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆140Jun 28, 2024Updated last year
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 3 years ago
- web-based analysis tool for rare disease genomics☆204May 1, 2026Updated last week
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- R package for Empirical Bayes Factor Analysis.☆53Dec 4, 2024Updated last year
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Recombination maps from Bhérer, C. et al. Nature Communications☆13Apr 25, 2017Updated 9 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Apr 13, 2026Updated 3 weeks ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆178Nov 2, 2024Updated last year
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 5 years ago