An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
☆17Sep 10, 2024Updated last year
Alternatives and similar repositories for saltnpeppr
Users that are interested in saltnpeppr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 3 years ago
- Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.☆78Mar 27, 2025Updated last year
- ☆52Jan 27, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆95May 29, 2025Updated last year
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆36May 15, 2026Updated 3 months ago
- Directed evolution of proteins in sequence space with gradients☆97Oct 18, 2025Updated 10 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆42May 29, 2024Updated 2 years ago
- ☆13May 24, 2026Updated 3 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆25Sep 18, 2025Updated 11 months ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 2 years ago
- ☆101Jul 24, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Nov 20, 2024Updated last year
- ☆24May 19, 2025Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 5 years ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆11Aug 1, 2026Updated last month
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆14Nov 24, 2023Updated 2 years ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆10Jun 13, 2022Updated 4 years ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆40Nov 25, 2024Updated last year
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12Aug 26, 2024Updated 2 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆122Aug 14, 2026Updated 2 weeks ago
- ☆11Apr 25, 2021Updated 5 years ago
- Transfer learning for Mutation Effect Prediction☆17Feb 13, 2024Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Feynman-Kac steering for controllable protein diffusion☆37Aug 16, 2026Updated 2 weeks ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆14Jul 28, 2020Updated 6 years ago
- A program fror inter-protein contact prediction from structures of interacting proteins☆22Jun 1, 2024Updated 2 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆132Oct 30, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆106Apr 24, 2024Updated 2 years ago
- DyNoPy☆11Sep 5, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- Python wrapper for OSRA. Supports R-Group logic and integration with ChemSchematicResolver☆10Apr 4, 2020Updated 6 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆20Sep 2, 2022Updated 3 years ago
- ☆17Jul 24, 2026Updated last month
- ☆25May 26, 2025Updated last year