programmablebio / saltnpeppr
An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
☆16Updated 6 months ago
Alternatives and similar repositories for saltnpeppr:
Users that are interested in saltnpeppr are comparing it to the libraries listed below
- Code for deep learning guided design of dynamic proteins☆17Updated 8 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- Some scripts that I keep using over and over.☆18Updated 2 months ago
- Protein Sequence Evolutionary Information Language Model☆12Updated last year
- Kuhlman Lab Installation of AlphaFold3☆23Updated 2 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 5 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆17Updated last year
- ☆36Updated last year
- ☆26Updated 5 months ago
- ☆33Updated 6 months ago
- DyNoPy☆11Updated 6 months ago
- Pretrained METL models with minimal dependencies☆14Updated last month
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆11Updated 11 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆21Updated last week
- Interface-aware molecular generative framework for protein-protein interaction modulators☆13Updated 3 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆18Updated 3 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆21Updated last year
- GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.☆9Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆43Updated 3 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆23Updated last year
- ☆11Updated 3 months ago
- ☆9Updated 2 years ago
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆19Updated 8 months ago
- ☆17Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 10 months ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated last year
- Extension of ThermoMPNN for double mutant predictions☆30Updated 2 weeks ago
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago
- ☆26Updated last month
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago