luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).
☆10Nov 28, 2023Updated 2 years ago
Alternatives and similar repositories for pangenome_workflow
Users that are interested in pangenome_workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- ☆22Aug 2, 2023Updated 2 years ago
- Spatial transcriptome analysis in python☆25Jan 26, 2025Updated last year
- ☆11May 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE☆14Feb 26, 2021Updated 5 years ago
- Find common blocks and differences between DNA sequences☆44Nov 5, 2025Updated 7 months ago
- ☆23Jul 15, 2025Updated 10 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 5 years ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- Gene copy number prediction from k-mer frequencies☆17Apr 15, 2026Updated last month
- 微信扫码登陆在Django上的实现☆11Jan 14, 2021Updated 5 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 9 months ago
- Public repository for the biodata resource inventory performed in 2022.☆11Nov 25, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated last year
- Microbial Populations as Clusters Of Gene Transfer☆45Dec 4, 2023Updated 2 years ago
- FLASH (Fast Length Adjustment of SHort reads); mirror of https://git.code.sf.net/p/flashpage/code☆13Mar 6, 2018Updated 8 years ago
- An r package for proteomics data Analysis, developed from DEP.☆36Mar 21, 2025Updated last year
- Omics: Angular + Rust☆11Jan 20, 2023Updated 3 years ago
- Browserslist Differential Script Loading webpack plugin.☆11Dec 12, 2022Updated 3 years ago
- ☆16Aug 17, 2023Updated 2 years ago
- A comprehensive analysis platform for exploring traditional Chinese medicine☆11Apr 10, 2024Updated 2 years ago
- Detect viral infection and integration sites on NGS input. Manuscript is in preparation.☆10Jan 20, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Jun 13, 2020Updated 5 years ago
- Fast implementation of the neighbour-joining phylogenetic inference method☆22May 23, 2020Updated 6 years ago
- Implementation of Krona to QIIME2☆16Mar 14, 2024Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆20Mar 3, 2023Updated 3 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated last year
- I have developed a local computer software called OmicsTools for unlimited, zero-code bioinformatics data analysis and visualization. Omi…☆22Apr 5, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Forecasting high-impact research topics via machine learning on evolving knowledge graphs☆52Nov 26, 2025Updated 6 months ago
- An MS Word Ribbon that links Zotero citations to their bibliography.☆55Nov 17, 2025Updated 6 months ago
- (In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Pyt…☆11Updated this week
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Apr 28, 2026Updated last month
- 股票预警助手(stock alert helper)☆20May 9, 2025Updated last year
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago