Alternatives and similar repositories for ksea

Users that are interested in ksea are comparing it to the libraries listed below

• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆93Updated 4 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆99Updated last year
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆100Updated 4 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆94Updated last year
• csoneson / conquer_comparison
  Code for evaluation of differential expression methods in single-cell RNA-seq data
  ☆111Updated 5 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆57Updated 2 years ago
• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 7 years ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆124Updated 2 weeks ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆179Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆169Updated 7 months ago
• caleblareau / BuenColors
  R package of colors for the Buenrostro Lab
  ☆86Updated last year
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆185Updated last year
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆124Updated this week
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆95Updated 3 years ago
• raphael-group / hotnet2
  HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
  ☆102Updated 7 years ago
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆107Updated 2 years ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated last month
• yanailab / CEL-Seq-pipeline
  ☆33Updated 7 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆84Updated 2 years ago
• mskcc / RNAseqDB
  ☆144Updated 7 years ago
• riazn / bms038_analysis
  Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…
  ☆54Updated 8 years ago
• saeyslab / moduledetection-evaluation
  ☆33Updated 4 years ago
• tallulandrews / scRNASeqPipeline
  ☆118Updated 7 years ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• iscb-dc-rsg / 2016-summer-workshop
  ISCB DC Area Regional Student Group - Summer 2016 Workshop
  ☆48Updated 9 years ago
• PierreBSC / Viral-Track
  ☆63Updated 5 years ago
• netZoo / netZooR
  netZooR is a network biology package implemented in R.
  ☆117Updated 3 weeks ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆81Updated 8 months ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆199Updated 2 weeks ago