UCSF-DSOS / scRNA_seqLinks
scRNA seq analysis using Seurat V3
☆13Updated 4 years ago
Alternatives and similar repositories for scRNA_seq
Users that are interested in scRNA_seq are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- ☆73Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- ☆70Updated last year
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- Mouse cell atlas☆61Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Updated 7 years ago
- ☆63Updated 5 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Updated last week
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Updated 6 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆42Updated 5 years ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 8 months ago