scRNA seq analysis using Seurat V3
☆13Jun 23, 2021Updated 4 years ago
Alternatives and similar repositories for scRNA_seq
Users that are interested in scRNA_seq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- ☆12Apr 24, 2020Updated 6 years ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Apr 17, 2025Updated last year
- ☆20Mar 19, 2026Updated last month
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆14May 23, 2016Updated 9 years ago
- time course regulatory analysis from paired gene expression and chromatin accessibility time course data☆11Nov 10, 2023Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- rnn trained on r/emojipasta☆12Nov 1, 2018Updated 7 years ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆13Oct 11, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆33Nov 9, 2019Updated 6 years ago
- ☆12Sep 8, 2020Updated 5 years ago
- "Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus R…☆13Jan 7, 2018Updated 8 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆12Dec 29, 2024Updated last year
- R package to analyze single cell DNA sequencing data.☆11Jan 28, 2026Updated 3 months ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 4 months ago
- Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)☆17May 29, 2020Updated 5 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 3 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆67Jun 6, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 3 weeks ago
- A tutorial for the analysis of high-dimensional flow cytometry data☆27Aug 28, 2019Updated 6 years ago
- Introduction to Python Course Lectures and Supportive Articles☆10Mar 18, 2023Updated 3 years ago
- A collection of data visualizations created for the #30DayChartChallenge. Mixing insight with aesthetics, caffeine optional but recommend…☆17Apr 23, 2026Updated last week
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 4 years ago
- The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysi…☆18Oct 22, 2021Updated 4 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆29Jan 27, 2021Updated 5 years ago
- Scripts for sincle cell multiome analysis☆15Apr 6, 2022Updated 4 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 4 years ago
- A tool to facilitate comparative visualisation of CLIP data☆17Nov 29, 2023Updated 2 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago