Alternatives and similar repositories for ImmuneApp:

Users that are interested in ImmuneApp are comparing it to the libraries listed below

• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆52Updated 11 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆37Updated 4 months ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆18Updated 11 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆39Updated last year
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆39Updated last year
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 10 months ago
• TencentAILabHealthcare / SC-AIR-BERT
  ☆9Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• NKI-AI / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated 11 months ago
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆15Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 3 years ago
• XSLiuLab / TLimmuno2
  TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning
  ☆9Updated last year
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 8 months ago
• regeneron-mpds / TCRAI
  ☆16Updated 3 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated 3 weeks ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆32Updated 3 years ago
• Lee-CBG / ATM-TCR
  ☆9Updated last year
• X-lab-3D / PANDORA
  MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
  ☆20Updated last month
• kaistomics / DeepNeo
  identification of immunogenic neoepitopes
  ☆12Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 3 months ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆23Updated 2 months ago
• dnusinow / cRomppass
  Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
  ☆10Updated 9 years ago
• haiyuan-yu-lab / PIONEER
  ☆25Updated 4 months ago
• wrightgs / CHARMING
  Contains CHARMING.py and its associated README.md
  ☆11Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆48Updated 8 months ago