bsml320 / ImmuneAppLinks
ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis
☆14Updated last year
Alternatives and similar repositories for ImmuneApp
Users that are interested in ImmuneApp are comparing it to the libraries listed below
Sorting:
- HLA-I ligand predictor☆43Updated 3 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- MS/MS prediction for peptides☆24Updated 5 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Updated 2 years ago
- Python package for investigating the structural context of PTMs☆28Updated last year
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆39Updated last year
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 8 months ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Updated last year
- Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data☆26Updated 2 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- ☆17Updated 4 years ago
- ☆85Updated 2 years ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Updated last year
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆26Updated last month
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated last week
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Antibody-Specific Epitope Mapping☆15Updated 4 months ago
- ☆29Updated last year
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated last week
- ☆21Updated 3 years ago
- ☆48Updated 4 years ago
- A visualization software for antibody multi sequence alignment☆22Updated last year
- ☆46Updated 2 months ago
- RNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8☆70Updated 2 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆49Updated last week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year