Alternatives and similar repositories for ImmuneApp

Users that are interested in ImmuneApp are comparing it to the libraries listed below

• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆68Updated 2 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆39Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆39Updated 4 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• JiangBioLab / DLpTCR
  Predicting immunogenic peptide recognized by TCR through ensemble deep learning
  ☆15Updated last year
• TencentAILabHealthcare / SC-AIR-BERT
  ☆9Updated 2 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆18Updated last month
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆26Updated 3 weeks ago
• haiyuan-yu-lab / PIONEER
  ☆25Updated 4 months ago
• TRON-Bioinformatics / TCLP
  an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
  ☆10Updated last year
• XSLiuLab / TLimmuno2
  TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning
  ☆9Updated last year
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 9 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 4 months ago
• anazhmetdin / siRNAdesigner
  python script that picks suitable targets for siRNA with off-target optimization
  ☆16Updated 3 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆20Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• bm2-lab / UniTCR
  ☆9Updated last year
• bittremieux-lab / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆25Updated last year
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆39Updated last year
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 3 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆36Updated 7 months ago
• X-lab-3D / PANDORA
  MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
  ☆20Updated 2 weeks ago
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆15Updated 4 years ago
• lulab / OligoFormer
  ☆24Updated last week
• dnusinow / cRomppass
  Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence
  ☆10Updated 9 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆18Updated 11 months ago
• piercelab / tcrmodel2
  ☆40Updated last month
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆24Updated 3 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year