bsml320 / ImmuneAppLinks
ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis
☆13Updated 9 months ago
Alternatives and similar repositories for ImmuneApp
Users that are interested in ImmuneApp are comparing it to the libraries listed below
Sorting:
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆40Updated last year
- HLA-I ligand predictor☆40Updated 6 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆69Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆22Updated last month
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆10Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- TCR validated database☆21Updated last month
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆9Updated 2 years ago
- ☆9Updated 2 years ago
- A visualization software for antibody multi sequence alignment☆18Updated last year
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆43Updated 3 years ago
- Code for 5UTR project☆24Updated 2 years ago
- ☆45Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 2 months ago
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra☆35Updated 7 months ago
- ☆26Updated 6 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆25Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 2 months ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆21Updated last week
- Python package for investigating the structural context of PTMs☆28Updated 5 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- identification of immunogenic neoepitopes☆12Updated 2 years ago
- Multi-Species Codon Optimization Engine☆27Updated last year
- R Package for Systematic Optimization of Metabolomic Data Processing☆17Updated 2 months ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 10 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Updated 2 years ago