opencb / biodataLinks
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
☆30Updated this week
Alternatives and similar repositories for biodata
Users that are interested in biodata are comparing it to the libraries listed below
Sorting:
- conda recipes for genomic data☆85Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 weeks ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated this week
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 8 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- A Teaching Engine for Genomics☆12Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆13Updated 9 years ago
- ☆36Updated last month
- Ensembl tools☆34Updated last month
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 4 years ago
- ☆30Updated 8 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Consensus assembly and variant calling workflow.☆12Updated 10 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆25Updated 3 weeks ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago