opencb / biodataLinks
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
☆31Updated this week
Alternatives and similar repositories for biodata
Users that are interested in biodata are comparing it to the libraries listed below
Sorting:
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆63Updated 2 weeks ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Aligner for sequencing data☆21Updated 9 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆48Updated 5 months ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- Nanopore desc☆18Updated 9 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 3 months ago
- ☆13Updated 6 years ago
- Generic Interactive Variant Analysis browser☆29Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated 2 months ago
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆14Updated last month
- Ensembl tools☆35Updated 6 months ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- a string to graph aligner☆41Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 4 years ago
- Test data for MultiQC.☆21Updated last month
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.☆27Updated 12 years ago