Alternatives and similar repositories for biodata

Users that are interested in biodata are comparing it to the libraries listed below

• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆63Updated last week
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 10 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆91Updated last year
• schatzlab / appliedgenomics2017
  JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
  ☆58Updated 7 years ago
• RealTimeGenomics / rtg-core
  RTG Core: Software for alignment and analysis of next-gen sequencing data.
  ☆48Updated 4 months ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆35Updated 3 months ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• ekg / glia
  a string to graph aligner
  ☆41Updated 9 years ago
• opencb / hpg-pore
  Nanopore desc
  ☆18Updated 9 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• xuchang116 / smCounter
  smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…
  ☆20Updated 6 years ago
• PacificBiosciences / pbcore
  A Python library for reading and writing PacBio® data files
  ☆41Updated last week
• mgymrek / pybamview
  Browser based application for viewing bam alignments
  ☆56Updated 8 years ago
• ncbi / magicblast
  ☆36Updated 5 months ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆47Updated last month
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated last week
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 5 months ago
• Cibiv / Teaser
  A tool to benchmark mappers and different parameters within minutes
  ☆44Updated 6 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• robsyme / nextflow-annotate
  Workflows I find helpful for fungal genome annotation
  ☆21Updated 2 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆58Updated 8 years ago