BioC++ core library (alphabet, meta, ranges)
☆21Jul 21, 2023Updated 3 years ago
Alternatives and similar repositories for biocpp-core
Users that are interested in biocpp-core are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.☆458Updated this week
- R package to quickly obtain count vectors from indexed bam files☆15May 21, 2026Updated 2 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- ☆32Aug 2, 2022Updated 3 years ago
- ☆15Dec 22, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 3 years ago
- RNAcode - Detecting protein coding genes in multiple sequence alignment☆26Aug 22, 2024Updated last year
- Fast interval intersection library☆45Jul 14, 2026Updated last week
- Species Level Identification of Microbes from Metagenomes☆27Apr 30, 2019Updated 7 years ago
- An experimental AI agent workflow.☆16Oct 11, 2025Updated 9 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆57Mar 4, 2024Updated 2 years ago
- bíogo data store repository☆38Nov 20, 2020Updated 5 years ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆24Jan 21, 2026Updated 6 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Plot allele frequencies in VCF files☆11Apr 13, 2026Updated 3 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆223Jul 15, 2026Updated last week
- Raspberry Pi family support for Genode OS framework (migrated to codeberg.org)☆17Jan 29, 2026Updated 5 months ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆22Dec 2, 2025Updated 7 months ago
- SeqAn's official repository.☆503Updated this week
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 3 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 10 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 8 months ago
- BLAKE3 Cryptographic Hash Function in R☆13Jan 13, 2020Updated 6 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 5 months ago
- An R package of assertive functions to check the properties of common R objects.☆13Jul 18, 2026Updated last week
- Just another minhash implementation.☆12May 28, 2026Updated last month
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆51Jun 5, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R interface for the QuickJS lightweight javascript engine☆17Jul 1, 2026Updated 3 weeks ago
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- bíogo ncbi utilities repository