Alternatives and similar repositories for biocpp-core

Users that are interested in biocpp-core are comparing it to the libraries listed below

• gpertea / gclib
  GCLib - Genomic C++ library of reusable code for bioinformatics projects
  ☆38Updated 5 months ago
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆48Updated last year
• COMBINE-lab / cuttlefish
  Building the compacted de Bruijn graph efficiently from references or reads.
  ☆91Updated 7 months ago
• lh3 / klib.nim
  Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
  ☆31Updated 5 years ago
• kimrutherford / EMBOSS
  MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)
  ☆29Updated 3 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆56Updated last year
• statgen / libStatGen
  Useful set of classes for creating statistical genetic programs.
  ☆52Updated 2 years ago
• jermp / lphash
  Fast and compact locality-preserving minimal perfect hashing for k-mer sets.
  ☆43Updated 2 years ago
• muellan / metacache
  memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
  ☆64Updated 6 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated last month
• mbhall88 / ssubmit
  Submit slurm sbatch jobs without a script
  ☆72Updated 4 months ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆56Updated 2 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆46Updated 6 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• andreas-wilm / nimreadfq
  A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser
  ☆15Updated 2 years ago
• jkbonfield / io_lib
  Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varie…
  ☆37Updated 5 months ago
• Kingsford-Group / variantstore
  VariantStore: A Large-Scale Genomic Variant Search Index
  ☆38Updated 4 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• refresh-bio / fqsqueezer
  FQSqueezer - FASTQ compressor based on k-mer statistics
  ☆17Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆87Updated last week
• DecodeGenetics / popvcf
  Lossless VCF compression
  ☆21Updated 3 years ago
• ekg / bamaddrg
  adds sample names and read-group (RG) tags to BAM alignments
  ☆51Updated 5 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 3 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• jstjohn / SimSeq
  An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…
  ☆67Updated 11 years ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆40Updated last year
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆55Updated 2 months ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 3 years ago