biocpp / biocpp-coreLinks
BioC++ core library (alphabet, meta, ranges)
☆21Updated 2 years ago
Alternatives and similar repositories for biocpp-core
Users that are interested in biocpp-core are comparing it to the libraries listed below
Sorting:
- Building the compacted de Bruijn graph efficiently from references or reads.☆89Updated 6 months ago
- Self-contained, multi-threaded fasta/q parser☆48Updated last year
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆37Updated 3 months ago
- Fast interval intersection library☆43Updated 2 months ago
- 1-code framework: docs, C-library, and tools☆25Updated 3 weeks ago
- Lossless VCF compression☆20Updated 3 years ago
- Build and maintain multiple custom conda environments all in one place.☆39Updated 11 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Updated 5 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 4 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆54Updated last year
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Updated 5 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Updated 5 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆28Updated 3 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆24Updated 4 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆85Updated 2 months ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- Efficient, parallel compression for terabyte-scale data☆52Updated last month
- A C library for handling bigWig files☆81Updated 9 months ago
- ziglang + htslib☆20Updated 4 years ago
- DEvis: an R package for aggregation and visualization of differential expression data☆20Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago