An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
☆180Apr 2, 2026Updated last week
Alternatives and similar repositories for opencga
Users that are interested in opencga are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆94Mar 12, 2026Updated 3 weeks ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 3 years ago
- JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us kno…☆42Mar 12, 2026Updated 3 weeks ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆31Mar 5, 2026Updated last month
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Web application for clinical pharmacogenomic interpretation☆10Mar 3, 2017Updated 9 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 9 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Jul 6, 2022Updated 3 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4…☆34Jan 13, 2023Updated 3 years ago
- The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients …☆105May 3, 2022Updated 3 years ago
- HGVS variant description extractor☆11Sep 14, 2020Updated 5 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆148Feb 17, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Website to analyze conflicting assertions in ClinVar☆19Mar 16, 2026Updated 3 weeks ago
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- MyVariant.info: A BioThings API for human variant annotations☆98Sep 10, 2025Updated 7 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 5 months ago
- ☆28Oct 7, 2025Updated 6 months ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 6 years ago
- web-based analysis tool for rare disease genomics☆203Updated this week
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆25Nov 19, 2019Updated 6 years ago
- Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redca…☆17Jan 15, 2016Updated 10 years ago
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Jun 26, 2020Updated 5 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- using all the bits for echt rapid variant annotation and filtering☆156Feb 18, 2026Updated last month
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Mar 20, 2025Updated last year
- ☆46Nov 18, 2019Updated 6 years ago
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Cloud-native genomic dataframes and batch computing☆1,052Updated this week
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Jul 10, 2017Updated 8 years ago
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- A modern Python library for BaseSpace Clarity LIMS.☆16Oct 23, 2025Updated 5 months ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- ☆92Jan 11, 2022Updated 4 years ago