An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
☆179May 22, 2026Updated 4 months ago
Alternatives and similar repositories for opencga
Users that are interested in opencga are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆95Mar 12, 2026Updated 6 months ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us kno…☆40Mar 12, 2026Updated 6 months ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆31Mar 5, 2026Updated 7 months ago
- This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster☆17Apr 13, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 6 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆32Jul 6, 2022Updated 4 years ago
- A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4…☆35Jan 13, 2023Updated 3 years ago
- The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients …☆106May 3, 2022Updated 4 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 7 months ago
- HGVS variant description extractor☆11Apr 13, 2026Updated 5 months ago
- ☆28Oct 7, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Website to analyze conflicting assertions in ClinVar☆20Mar 16, 2026Updated 6 months ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- MyVariant.info: A BioThings API for human variant annotations☆98Updated this week
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 11 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Models and APIs for Genomic data. RETIRED 2018-01-24☆220Oct 28, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- web-based analysis tool for rare disease genomics☆219Updated this week
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆25Nov 19, 2019Updated 6 years ago
- Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redca…☆17Jan 15, 2016Updated 10 years ago
- BrowseVCF is a web-based application and workflow to quickly prioritise disease-causative variants in VCF files.☆47Jun 26, 2020Updated 6 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- a lightweight db framework for exploring genetic variation.☆328Apr 28, 2020Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆14Sep 22, 2026Updated 2 weeks ago
- Cloud-native genomic dataframes and batch computing☆1,080Oct 2, 2026Updated last week
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- ☆44Nov 18, 2019Updated 6 years ago
- A modern Python library for BaseSpace Clarity LIMS.☆15Oct 23, 2025Updated 11 months ago
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- Efficient base quality score recalibrator for NGS data☆24Nov 28, 2015Updated 10 years ago