genome-in-a-bottle / giab_data_analysisView external linksLinks
This repository contains information about ongoing analysis performed by GIAB
☆14Aug 30, 2019Updated 6 years ago
Alternatives and similar repositories for giab_data_analysis
Users that are interested in giab_data_analysis are comparing it to the libraries listed below
Sorting:
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Companion repository for the human variant calling pipeline comparison paper☆11Feb 21, 2022Updated 3 years ago
- This repository contains information about latest release from Genome in a Bottle project☆75Aug 30, 2019Updated 6 years ago
- HGVS variant description extractor☆11Sep 14, 2020Updated 5 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jan 9, 2026Updated last month
- This repository contains a list of tools or methods that have been used in GIAB analysis☆29Nov 15, 2019Updated 6 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 2 years ago
- Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing☆13Jan 25, 2019Updated 7 years ago
- ☆15Aug 1, 2021Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 6 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Dec 26, 2022Updated 3 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 3 years ago
- ☆18Mar 14, 2022Updated 3 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 3 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated last year
- ☆24Jul 28, 2016Updated 9 years ago
- An introduction about the Genome-in-a-Bottle project☆25Aug 30, 2019Updated 6 years ago
- Simple vcf parser, based on PyVCF☆48Dec 6, 2018Updated 7 years ago
- VariantGrid public repo☆24Updated this week
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- VarIant SimulatOR for short, long and linked reads☆51Oct 21, 2024Updated last year
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Sep 15, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 5 months ago
- ☆18Jan 24, 2018Updated 8 years ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆31Updated this week
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- ☆28Oct 7, 2025Updated 4 months ago
- Visualise interstrain recombination from environmental samples.☆26Apr 18, 2019Updated 6 years ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated 2 weeks ago
- This repository contains data indexes from NIST's Genome in a Bottle project.☆263Nov 30, 2023Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Free mtDNA Haplogroup Classification Service☆31Jul 3, 2025Updated 7 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Feb 6, 2026Updated last week
- Scripts and files for the annual Short Read Analysis Workshop☆12Jul 21, 2025Updated 6 months ago