ericminikel / minimal_representationLinks
Convert genetic variants to minimal representation
☆23Updated 8 years ago
Alternatives and similar repositories for minimal_representation
Users that are interested in minimal_representation are comparing it to the libraries listed below
Sorting:
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 7 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated this week
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 8 months ago
- ☆78Updated 11 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago