ericminikel / minimal_representationLinks
Convert genetic variants to minimal representation
☆23Updated 8 years ago
Alternatives and similar repositories for minimal_representation
Users that are interested in minimal_representation are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Browser based application for viewing bam alignments☆56Updated 9 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 15 years ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 9 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- Maximum likelihood demultiplexing☆50Updated 10 months ago
- ☆78Updated 11 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 8 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago