This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
☆17Apr 13, 2018Updated 8 years ago
Alternatives and similar repositories for hpg-bigdata
Users that are interested in hpg-bigdata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆95Mar 12, 2026Updated 5 months ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Feb 24, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆180May 22, 2026Updated 3 months ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Nov 2, 2015Updated 10 years ago
- Cloud-scale differential expression for RNA-seq☆15May 23, 2023Updated 3 years ago
- Combination of Dockerized Hortonworks projects and other Hadoop ecosystem components☆10Oct 11, 2019Updated 6 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Provides syntax highlighting for Apptainer/Singularity definition files.☆10Dec 24, 2025Updated 8 months ago
- apple-boot启动过程中发布广播，apple-monitor接收广播信息，然后通过jmx自动监控应用☆10Oct 22, 2018Updated 7 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 11 months ago
- dubbo-brave集成☆10Mar 16, 2016Updated 10 years ago
- 基于Kafka和MongoDB的结构化日志异步记录和预警框架☆10Sep 1, 2016Updated 9 years ago
- site crawler for knowledge graph☆14Jul 4, 2018Updated 8 years ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago
- SAGA-based Pilot-Job Implementation for Compute and Data☆19Mar 14, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 一个推荐系统的java实现☆10Nov 30, 2016Updated 9 years ago
- ☆11Oct 21, 2016Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 months ago
- A repository on resources about Mendelian Randomization☆10Jul 9, 2018Updated 8 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆43Feb 13, 2026Updated 6 months ago
- Light Cube using PYNQ☆10Aug 4, 2018Updated 8 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 4 months ago
- What the Package Does (One Line, Title Case)☆13May 16, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Trigram tokenizer module for SQLite FTS5☆14Feb 22, 2021Updated 5 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆11Feb 6, 2025Updated last year
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Raptor IoT platform☆12May 24, 2018Updated 8 years ago
- Scripts for making Hadoop deployments in AWS easy☆10Feb 26, 2014Updated 12 years ago
- ☆13Apr 16, 2026Updated 4 months ago