Alternatives and similar repositories for hpg-bigdata

Users that are interested in hpg-bigdata are comparing it to the libraries listed below

• bigdatagenomics / mango
  A scalable genome browser. Apache 2 licensed.
  ☆126Updated 3 years ago
• citiususc / SparkBWA
  SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…
  ☆69Updated 6 years ago
• HadoopGenomics / Hadoop-BAM
  Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
  ☆72Updated 3 years ago
• allenday / spark-genome-alignment-demo
  An example of bioinformatics and bigdata tools can playing nicely together
  ☆14Updated 9 years ago
• bigdatagenomics / bdg-formats
  Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
  ☆41Updated 11 months ago
• BauerLab / VariantSpark
  VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information
  ☆33Updated 8 years ago
• bigdatagenomics / avocado
  A Variant Caller, Distributed. Apache 2 licensed.
  ☆71Updated 6 years ago
• Steven-N-Hart / VariantDB_Challenge
  Finding a scalable alternative to the VCF File for genomics analysis
  ☆14Updated 9 years ago
• nfergu / popstrat
  Population Stratification Analysis on Genomics Data Using Deep Learning
  ☆25Updated 9 years ago
• aehrc / VariantSpark
  machine learning for genomic variants
  ☆147Updated 2 weeks ago
• bigdatagenomics / eggo
  Ready-to-go Parquet-formatted public 'omics datasets
  ☆30Updated 10 years ago
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• nmdp-bioinformatics / ngs
  Next generation sequencing (NGS/HTS) tools.
  ☆19Updated 2 years ago
• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• adarob / eXpress
  Streaming fragment assignment and quantification for high-throughput sequencing.
  ☆38Updated 6 years ago
• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆176Updated this week
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆75Updated 5 years ago
• hammerlab / pageant
  Parallel Genomic Analysis Toolkit
  ☆14Updated 6 years ago
• ddcap / halvade
  New url: https://github.com/biointec/halvade
  ☆19Updated 8 years ago
• opencb / biodata
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…
  ☆31Updated this week
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆99Updated 8 months ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆109Updated 3 years ago
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆42Updated 2 years ago
• hammerlab / spark-bam
  Load genomic BAM files using Apache Spark
  ☆21Updated 7 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• opencb / cellbase
  High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…
  ☆92Updated this week
• verilylifesciences / variant-qc
  Quality control methods for human genomic variants.
  ☆61Updated 3 years ago
• timpalpant / java-genomics-toolkit
  Collection of scripts for working with Wiggle files and analyzing sequencing data
  ☆17Updated 6 years ago