opencb / hpg-bigdataLinks
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
☆17Updated 7 years ago
Alternatives and similar repositories for hpg-bigdata
Users that are interested in hpg-bigdata are comparing it to the libraries listed below
Sorting:
- A scalable genome browser. Apache 2 licensed.☆125Updated 2 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 9 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆40Updated 6 months ago
- New url: https://github.com/biointec/halvade☆19Updated 8 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆72Updated 2 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 8 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Updated last year
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆74Updated 4 years ago
- machine learning for genomic variants☆146Updated this week
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆31Updated 2 weeks ago
- Variant calling from sequence reads using cloud computing☆40Updated 11 years ago
- ☆15Updated 4 months ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆172Updated last week
- Streaming fragment assignment and quantification for high-throughput sequencing.☆36Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 3 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- High performance data storage for importing, querying and transforming variants.☆98Updated 3 months ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- Quality control methods for human genomic variants.☆62Updated 2 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Updated 6 years ago
- Scripts for working with Google Cloud Dataproc service☆37Updated 6 years ago
- Aligner for sequencing data☆18Updated 7 years ago