This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
☆17Apr 13, 2018Updated 7 years ago
Alternatives and similar repositories for hpg-bigdata
Users that are interested in hpg-bigdata are comparing it to the libraries listed below
Sorting:
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆31Mar 5, 2026Updated 2 weeks ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 7 years ago
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆94Mar 12, 2026Updated last week
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 3 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Feb 24, 2017Updated 9 years ago
- JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us kno…☆42Mar 12, 2026Updated last week
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆177Mar 13, 2026Updated last week
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Nov 2, 2015Updated 10 years ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 9 years ago
- Combination of Dockerized Hortonworks projects and other Hadoop ecosystem components☆10Oct 11, 2019Updated 6 years ago
- python-fuse for reading time machine backups on linux☆16Feb 12, 2021Updated 5 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Provides syntax highlighting for Apptainer/Singularity definition files.☆10Dec 24, 2025Updated 2 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago
- ☆15Apr 2, 2025Updated 11 months ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- A scalable genome browser. Apache 2 licensed.☆126Dec 2, 2022Updated 3 years ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago
- ☆11Oct 21, 2016Updated 9 years ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago
- A repository on resources about Mendelian Randomization☆10Jul 9, 2018Updated 7 years ago
- ☆12Apr 8, 2021Updated 4 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Feb 13, 2026Updated last month
- This project contains a set of scripts to facilitate the setup of the Jetson Nano for doing Deep Learning with Tensorflow 2.0 (and also w…☆11Oct 25, 2019Updated 6 years ago
- Visualizing genetic sequence variation☆13Apr 27, 2020Updated 5 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11May 19, 2020Updated 5 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 10 months ago
- What the Package Does (One Line, Title Case)☆13May 16, 2018Updated 7 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- Scripts for making Hadoop deployments in AWS easy☆10Feb 26, 2014Updated 12 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 9 years ago
- Public issue tracker for the Ultorg Desktop application☆14Jan 19, 2023Updated 3 years ago