opencb / hpg-bigdata
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
☆17Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for hpg-bigdata
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics☆29Updated 2 weeks ago
- New url: https://github.com/biointec/halvade☆19Updated 7 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆39Updated last week
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆69Updated last year
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆39Updated 3 weeks ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 9 years ago
- Next generation sequencing (NGS/HTS) tools.☆18Updated 9 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 8 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- [Bio in Docker] Symposium 2015☆21Updated 7 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- BigDataScript: Scirpting language for big data☆92Updated 3 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Java Bindings (JNI) for bwa☆19Updated 7 years ago
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆38Updated 7 years ago
- Scripts for working with Google Cloud Dataproc service☆37Updated 5 years ago
- Variant calling from sequence reads using cloud computing☆39Updated 10 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 7 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Updated 5 years ago
- An opinionated Cromwell orchestration manager.☆40Updated last year