opencb / hpg-bigdata
This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
☆17Updated 6 years ago
Related projects: ⓘ
- ☆13Updated this week
- An example of bioinformatics and bigdata tools can playing nicely together☆14Updated 8 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆38Updated last month
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics☆29Updated this week
- Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework☆69Updated last year
- Population Stratification Analysis on Genomics Data Using Deep Learning☆26Updated 8 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 5 years ago
- Benchmarking toolkit for variant calling☆47Updated 3 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆38Updated 4 months ago
- ☆24Updated this week
- New url: https://github.com/biointec/halvade☆19Updated 7 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 6 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Updated 8 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Updated 7 years ago
- Efficient, distributed downloads of large files from S3 to HDFS using Spark.☆17Updated 7 years ago
- Next generation sequencing (NGS/HTS) tools.☆18Updated 7 months ago
- [Bio in Docker] Symposium 2015☆21Updated 6 years ago
- Toil workflows for common genomic pipelines☆32Updated 4 years ago
- ☆15Updated this week
- Scripts for working with Google Cloud Dataproc service☆37Updated 5 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Updated 5 years ago
- BigBWA is a new tool that uses the Big Data technology Hadoop to boost the performance of the Burrows–Wheeler aligner (BWA).☆31Updated 2 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 5 years ago
- Variant calling from sequence reads using cloud computing☆38Updated 10 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago
- ☆18Updated this week
- SparkBWA is a new tool that exploits the capabilities of a Big Data technology as Apache Spark to boost the performance of one of the mos…☆69Updated 5 years ago
- ☆16Updated this week
- ☆11Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 2 years ago