This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
☆17Apr 13, 2018Updated 8 years ago
Alternatives and similar repositories for hpg-bigdata
Users that are interested in hpg-bigdata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆31Mar 5, 2026Updated 6 months ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Generic Interactive Variant Analysis browser☆29Apr 12, 2022Updated 4 years ago
- requirements, examples, and tests for expression matrix file formats☆22Sep 18, 2018Updated 8 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us kno…☆40Mar 12, 2026Updated 6 months ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆179May 22, 2026Updated 3 months ago
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Ready-to-go Parquet-formatted public 'omics datasets☆30Nov 2, 2015Updated 10 years ago
- Cloud-scale differential expression for RNA-seq☆15May 23, 2023Updated 3 years ago
- Combination of Dockerized Hortonworks projects and other Hadoop ecosystem components☆10Oct 11, 2019Updated 6 years ago
- 1,895 Git aliases and scripts☆29Aug 27, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- Provides syntax highlighting for Apptainer/Singularity definition files.☆10Dec 24, 2025Updated 8 months ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- A scalable genome browser. Apache 2 licensed.☆127Dec 2, 2022Updated 3 years ago
- examples of using Singularity containers for web-based products☆10Jan 2, 2018Updated 8 years ago
- JS virtual machine implementation for education purpose☆12Jan 7, 2023Updated 3 years ago
- SAGA-based Pilot-Job Implementation for Compute and Data☆19Mar 14, 2026Updated 6 months ago
- ☆11Oct 21, 2016Updated 9 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- A repository on resources about Mendelian Randomization☆10Jul 9, 2018Updated 8 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆43Feb 13, 2026Updated 7 months ago
- ☆12Apr 8, 2021Updated 5 years ago
- Light Cube using PYNQ☆10Aug 4, 2018Updated 8 years ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 4 months ago
- What the Package Does (One Line, Title Case)☆13May 16, 2018Updated 8 years ago
- Trigram tokenizer module for SQLite FTS5☆14Feb 22, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- automatic visual data explorer for datasette☆14Apr 20, 2023Updated 3 years ago
- Scripts for making Hadoop deployments in AWS easy☆10Feb 26, 2014Updated 12 years ago
- A voice over network solution for WebRTC audio coming into and going out of Unreal Engine.☆10Jun 14, 2021Updated 5 years ago
- A 4x4x4 Tic-Tac-Toe game suitable for porting to embedded hardware platforms☆11Sep 6, 2017Updated 9 years ago
- Public issue tracker for the Ultorg Desktop application☆14Jan 19, 2023Updated 3 years ago
- Load Avro data into Spark with sparklyr☆12Jun 4, 2020Updated 6 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 8 months ago