opencb / iva
Generic Interactive Variant Analysis browser
☆29Updated 2 years ago
Alternatives and similar repositories for iva:
Users that are interested in iva are comparing it to the libraries listed below
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- LIkelihood Ratio Interpretation of Clinical AbnormaLities☆24Updated this week
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 10 months ago
- Website to analyze conflicting assertions in ClinVar☆17Updated 11 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆58Updated 2 weeks ago
- ☆23Updated last month
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 7 years ago
- Structural Variant Index☆71Updated last month
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆69Updated last year
- Thousand Variant Callers Project Repository☆71Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆31Updated 2 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated last week
- ☆23Updated 5 years ago
- Utilities to create and analyze gVCF files☆39Updated 7 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 6 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆78Updated last month
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- CLI for interacting with Cromwell servers☆53Updated 9 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- an empirical Bayesian framework for mutation detection from cancer genome sequencing data☆31Updated 8 years ago