ricket-sjtu / bioinformaticsView external linksLinks
Course materials for Computational Biology and Bioinformatics - BI462
☆27Nov 2, 2017Updated 8 years ago
Alternatives and similar repositories for bioinformatics
Users that are interested in bioinformatics are comparing it to the libraries listed below
Sorting:
- ☆14Dec 15, 2019Updated 6 years ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- This program can be used to parse the NCBI GenBank file to create a tabulated csv file.☆10Mar 4, 2019Updated 6 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 6 years ago
- Applied Statistics for High-Throughput Biology☆16Jul 18, 2025Updated 6 months ago
- Web-site for the 2020 CRUK CC Bioinformatics Summer School (Held virtually)☆24Mar 4, 2021Updated 4 years ago
- ☆26Oct 15, 2020Updated 5 years ago
- 是基础也是综合(一系列对象及函数,需要细致的讲解)☆30Apr 9, 2016Updated 9 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆31Feb 6, 2026Updated last week
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 3 years ago
- Workshop materials for shotgun metagenomics☆36Jul 17, 2017Updated 8 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Jan 10, 2022Updated 4 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- Library for managing Galaxy plugins - tools, index data, and workflows.☆31Feb 3, 2026Updated 2 weeks ago
- Sphinx documentation source for a computational genomics tutorial.☆36Dec 25, 2020Updated 5 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 7 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 5 years ago
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Feb 22, 2018Updated 7 years ago
- Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data.☆10Mar 6, 2025Updated 11 months ago
- Vector space representation of genetic data☆36Nov 18, 2016Updated 9 years ago
- protein embedding project☆12May 3, 2018Updated 7 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆32Mar 21, 2019Updated 6 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- ☆10May 31, 2022Updated 3 years ago
- Deep Learning Part 2, 2019 edition - transcriptions, screenshots and notebooks☆11Jul 19, 2019Updated 6 years ago
- Repository for codes for the HBCA paper☆41Mar 17, 2023Updated 2 years ago
- Genomelink Python SDK☆38Nov 2, 2018Updated 7 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆30Jan 27, 2026Updated 3 weeks ago
- CS273B Deep Learning for Genomics Course Materials☆34Sep 9, 2020Updated 5 years ago
- ☆10Oct 6, 2017Updated 8 years ago
- A web application framework for analysis and visualization of High throughput Sequencing metagenomic data☆10Nov 21, 2016Updated 9 years ago
- ☆10May 25, 2025Updated 8 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆11Jan 15, 2021Updated 5 years ago
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆12Dec 12, 2022Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. arulesSequences — Mining Frequent Sequences☆10Nov 25, 2025Updated 2 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Oct 30, 2025Updated 3 months ago
- ☆10Nov 3, 2023Updated 2 years ago
- Using Machine Learning to Identify Glioblastoma patients with NF1 inactivation☆11Dec 19, 2016Updated 9 years ago