opencb / cellbase
High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
☆92Updated this week
Alternatives and similar repositories for cellbase:
Users that are interested in cellbase are comparing it to the libraries listed below
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆170Updated this week
- GA4GH Variation Representation Python Implementation☆55Updated this week
- HTML5 scrollable genome browser☆109Updated last year
- Extensible specification for representing and uniquely identifying biological sequence variation☆88Updated 2 weeks ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated this week
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆96Updated 2 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆124Updated 5 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated this week
- C++ Library to parse Illumina InterOp files☆75Updated last month
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Documentation and description of AWS iGenomes S3 resource.☆113Updated 4 months ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆83Updated 6 months ago
- ☆82Updated 6 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 10 months ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Generic Interactive Variant Analysis browser☆29Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- TransVar - multiway annotator for precision medicine☆125Updated 2 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- High performance data storage for importing, querying and transforming variants.☆98Updated 3 weeks ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 3 weeks ago
- A modular annotation tool for genomic variants☆120Updated this week
- Browser for ExAC consortium data☆106Updated 3 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆156Updated last year
- Platypus Variant Caller☆108Updated 9 months ago
- Super small biological datasets for unit testing☆60Updated 5 years ago
- HGVS variant nomenclature checker☆98Updated last year