opencb / cellbase
High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
☆92Updated 2 weeks ago
Alternatives and similar repositories for cellbase:
Users that are interested in cellbase are comparing it to the libraries listed below
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆169Updated this week
- Extensible specification for representing and uniquely identifying biological sequence variation☆87Updated this week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 3 weeks ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 3 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Generic Interactive Variant Analysis browser☆29Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bu…☆30Updated this week
- GA4GH Variation Representation Python Implementation☆53Updated this week
- High performance data storage for importing, querying and transforming variants.☆98Updated this week
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆122Updated 5 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Updated 5 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated this week
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆201Updated 4 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆82Updated 5 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- TransVar - multiway annotator for precision medicine☆124Updated last year
- Browser for ExAC consortium data☆106Updated 3 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 4 years ago
- VarDict Java port☆133Updated last year
- Population-scale genotyping using pangenome graphs☆179Updated 2 months ago
- A collection of reusable WDL tasks. Category:Other☆86Updated this week
- python access to UCSC genomes database☆135Updated 4 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- using all the bits for echt rapid variant annotation and filtering☆149Updated this week