Alternatives and similar repositories for cellbase

Users that are interested in cellbase are comparing it to the libraries listed below

• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆171Updated this week
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated last month
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆196Updated 4 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated last month
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆203Updated 4 years ago
• DiltheyLab / HLA-LA
  Fast HLA type inference from whole-genome data
  ☆134Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆187Updated last week
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆74Updated 5 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 2 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆56Updated 2 weeks ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆75Updated last week
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆125Updated 2 years ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆196Updated last month
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆153Updated last month
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆125Updated 5 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated 2 weeks ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆136Updated 4 years ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆147Updated 2 weeks ago
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆252Updated 2 months ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 6 years ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆127Updated last year
• gear-genomics / tracy
  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
  ☆109Updated 2 months ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆97Updated 11 months ago