Alternatives and similar repositories for cellbase

Users that are interested in cellbase are comparing it to the libraries listed below

• opencb / opencga
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …
  ☆171Updated this week
• PharmGKB / PharmCAT
  The Pharmacogenomic Clinical Annotation Tool
  ☆140Updated 2 months ago
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆90Updated 3 months ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated last week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated this week
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated 2 months ago
• macarthur-lab / clinvar
  This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…
  ☆127Updated 5 years ago
• KarchinLab / open-cravat
  A modular annotation tool for genomic variants
  ☆125Updated last month
• opencb / iva
  Generic Interactive Variant Analysis browser
  ☆29Updated 3 years ago
• Ensembl / ensembl-rest
  Language agnostic RESTful data access to Ensembl data over HTTP
  ☆147Updated this week
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆85Updated 9 months ago
• genome-nexus / genome-nexus
  Backend server for Genome Nexus
  ☆42Updated 3 months ago
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆30Updated 2 years ago
• UMMS-Biocore / dolphinnext
  A graphical user interface for distributed data processing of high throughput genomics
  ☆5Updated last year
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated this week
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆78Updated last month
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆95Updated last month
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆114Updated 7 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 3 weeks ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 3 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated 4 months ago
• Clinical-Genomics / scout
  VCF visualization interface
  ☆169Updated this week
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆61Updated 6 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆49Updated 4 years ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆163Updated last year
• nextflow-io / nfcamp-tutorial
  A tutorial for DLS-2 migration
  ☆29Updated 5 years ago