oliverSI / GATK4_Best_Practice
GATK4 Best Practice Nextflow Pipeline
☆31Updated 7 years ago
Alternatives and similar repositories for GATK4_Best_Practice:
Users that are interested in GATK4_Best_Practice are comparing it to the libraries listed below
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 4 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- ☆51Updated 5 years ago
- Structural variant merging tool☆49Updated 5 months ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- Comprehensive benchmark of structural variant callers☆45Updated 3 years ago
- ☆39Updated 9 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- TIDDIT - structural variant calling☆73Updated last week
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆22Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Structural Variant Index☆71Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆103Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆56Updated 7 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- CNV screening and annotation tool☆24Updated 8 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago