GATK4 Best Practice Nextflow Pipeline
☆33Jan 18, 2018Updated 8 years ago
Alternatives and similar repositories for GATK4_Best_Practice
Users that are interested in GATK4_Best_Practice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Feb 20, 2020Updated 6 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 4 months ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11May 21, 2024Updated last year
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering☆18Nov 3, 2015Updated 10 years ago
- ☆10May 17, 2022Updated 3 years ago
- Awesome resources related to Galaxy project☆11Nov 23, 2024Updated last year
- for detecting internal tandem duplication from genome sequence data.☆12May 16, 2019Updated 6 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A comprehensive platform for population-scale genomic analyses☆10Jul 10, 2023Updated 2 years ago
- viral-ngs: complete pipelines☆73Updated this week
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- various sources and scripts for genomic research software☆10May 11, 2015Updated 10 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.☆11May 9, 2020Updated 5 years ago
- A library for converting molecular topologies☆13May 20, 2015Updated 10 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- Workflows for germline short variant discovery with GATK4☆139May 7, 2021Updated 4 years ago
- ☆12Apr 10, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- Docker container for Tripal☆10Mar 29, 2022Updated 3 years ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- NGS perl modules☆11Mar 19, 2026Updated last week