ohsu-comp-bio / funnelLinks
Funnel is a toolkit for distributed task execution via a simple, standard API.
☆131Updated last week
Alternatives and similar repositories for funnel
Users that are interested in funnel are comparing it to the libraries listed below
Sorting:
- workflow and resource management system for bioinformatics data analysis☆69Updated 5 years ago
- ☆92Updated last month
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- biogo high throughput sequencing repository☆132Updated 2 months ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- Language and framework for high performance computational pipelines.☆158Updated 4 months ago
- Deprecated☆100Updated 6 years ago
- High performance Workflow Runner☆30Updated 3 months ago
- An open source platform for managing and analyzing biomedical big data☆412Updated this week
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 6 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 3 weeks ago
- An app store for scientific workflows, tools, notebooks, and services☆130Updated last week
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- A lightweight and high-performance bioinformatics package in Golang☆95Updated 3 weeks ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆34Updated 5 months ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆43Updated 10 months ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- Workflow Description Language developer tools & local runner☆199Updated last week
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- a golang library to read, write and manipulate files in the variant call format.☆72Updated 2 months ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆99Updated 7 years ago
- Go / Golang Bioinformatics Library☆45Updated last year
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- Graph Integration Platform☆26Updated 2 weeks ago
- Reference server implementation for the GA4GH HTSget API standard.☆12Updated 2 years ago
- APIs for discovering genomics tools, their metadata and their containers☆32Updated 2 months ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆24Updated 6 years ago