ohsu-comp-bio / funnelLinks
Funnel is a toolkit for distributed task execution via a simple, standard API.
☆133Updated this week
Alternatives and similar repositories for funnel
Users that are interested in funnel are comparing it to the libraries listed below
Sorting:
- workflow and resource management system for bioinformatics data analysis☆70Updated 5 years ago
- ☆93Updated last month
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- High performance Workflow Runner☆30Updated last month
- biogo high throughput sequencing repository☆132Updated 4 months ago
- Bioinformatic infrastructure libraries☆78Updated 5 years ago
- Deprecated☆101Updated 6 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago
- An open source platform for managing and analyzing biomedical big data☆415Updated this week
- The WES API is a standard way to run and manage portable workflows.☆86Updated last month
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆19Updated 2 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- APIs for discovering genomics tools, their metadata and their containers☆33Updated last week
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆43Updated last year
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- An app store for scientific workflows, tools, notebooks, and services☆130Updated this week
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 6 years ago
- Workflow Description Language developer tools & local runner☆202Updated 2 months ago
- A lightweight and high-performance bioinformatics package in Golang☆95Updated 2 months ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆99Updated 7 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36Updated 7 months ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆24Updated 6 years ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- Common Workflow Language reference implementation☆362Updated this week
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆37Updated 3 weeks ago
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- Go / Golang Bioinformatics Library☆45Updated last year
- Graph Integration Platform☆27Updated last month