Alternatives and similar repositories for funnel

Users that are interested in funnel are comparing it to the libraries listed below

• ga4gh / task-execution-schemas
  ☆91Updated last week
• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 4 years ago
• VertebrateResequencing / wr
  High performance Workflow Runner
  ☆30Updated last week
• rabix / bunny
  [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
  ☆74Updated 4 years ago
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• biogo / hts
  biogo high throughput sequencing repository
  ☆128Updated this week
• grailbio / bio
  Bioinformatic infrastructure libraries
  ☆79Updated 5 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 6 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• arvados / arvados
  An open source platform for managing and analyzing biomedical big data
  ☆408Updated this week
• brentp / irelate
  Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang
  ☆47Updated 5 years ago
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated last month
• ohsu-comp-bio / cwl-tes
  cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
  ☆18Updated 2 years ago
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆31Updated last week
• otiai10 / cwl.go
  CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
  ☆22Updated 6 years ago
• dockstore / dockstore
  An app store for scientific workflows, tools, notebooks, and services
  ☆130Updated last week
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆66Updated last year
• shenwei356 / bio
  A lightweight and high-performance bioinformatics package in Golang
  ☆95Updated 2 weeks ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 3 months ago
• ga4gh / ga4gh-server
  Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
  ☆98Updated 7 years ago
• chanzuckerberg / miniwdl
  Workflow Description Language developer tools & local runner
  ☆193Updated 2 weeks ago
• elixir-cloud-aai / TESK
  GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
  ☆43Updated 7 months ago
• martian-lang / martian
  Language and framework for high performance computational pipelines.
  ☆156Updated 2 months ago
• common-workflow-language / workflow-service
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆36Updated 3 weeks ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• GenomicsDB / GenomicsDB
  High performance data storage for importing, querying and transforming variants.
  ☆98Updated 3 months ago
• Intel-HLS / GenomicsDB
  GenomicsDB
  ☆111Updated 2 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆60Updated 7 years ago
• pbenner / gonetics
  Go / Golang Bioinformatics Library
  ☆45Updated 10 months ago