ohsu-comp-bio / funnel
Funnel is a toolkit for distributed task execution via a simple, standard API.
☆121Updated this week
Related projects ⓘ
Alternatives and complementary repositories for funnel
- ☆82Updated last week
- High performance Workflow Runner☆30Updated last month
- workflow and resource management system for bioinformatics data analysis☆69Updated 4 years ago
- CWL (and input file) parser for Golang, used by github.com/otiai10/yacle☆22Updated 5 years ago
- The WES API is a standard way to run and manage portable workflows.☆82Updated last month
- Bioinformatic infrastructure libraries☆77Updated 4 years ago
- biogo high throughput sequencing repository☆125Updated 7 months ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 4 years ago
- Deprecated☆100Updated 5 years ago
- Language and framework for high performance computational pipelines.☆148Updated 3 months ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆74Updated 4 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated last year
- Mulled - Automatized Containerized Software Repository☆65Updated 8 months ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 4 months ago
- A lightweight and high-performance bioinformatics package in Golang☆92Updated 2 months ago
- An object store for scientific data☆51Updated 3 years ago
- An app store for scientific workflows, tools, notebooks, and services☆121Updated this week
- ☆11Updated 8 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆40Updated last month
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 4 years ago
- Yet Another CWL Engine by Golang☆18Updated 5 years ago
- APIs for discovering genomics tools, their metadata and their containers☆30Updated 3 weeks ago
- Server wrapper that turns command line tools into web services☆60Updated 6 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Workflow Description Language developer tools & local runner☆177Updated 3 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated 4 months ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Rich IDE support for Workflow Description Language☆42Updated 4 months ago
- Go / Golang Bioinformatics Library☆40Updated last month
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 5 years ago