Alternatives and similar repositories for scriptcwl:

Users that are interested in scriptcwl are comparing it to the libraries listed below

• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 4 years ago
• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 3 months ago
• common-workflow-language / workflow-service
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆36Updated 8 months ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆14Updated 4 years ago
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆39Updated this week
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 6 years ago
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 3 years ago
• galaxyproject / gxformat2
  Galaxy Workflow Format 2
  ☆9Updated this week
• common-workflow-lab / gxargparse
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Updated 5 years ago
• ga4gh / task-execution-server
  ☆11Updated 8 years ago
• elixir-cloud-aai / TESK
  GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes
  ☆40Updated last month
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 7 months ago
• common-workflow-lab / wdl-cwl-translator
  A translator from WDL to CWL v1.2
  ☆26Updated 3 weeks ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆33Updated 2 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• galaxyproject / galaxy-beta1
  Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…
  ☆12Updated 10 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆65Updated 11 months ago
• SGBC / galaksio
  An easy-to-use way for running Galaxy workflows.
  ☆20Updated 5 years ago
• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 4 months ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆67Updated 6 months ago
• bgruening / docker-ipython-notebook
  IPython running in a docker container. This image can be used to integrate IPython into Galaxy
  ☆17Updated 8 years ago
• sbg / sevenbridges-python
  SevenBridges Python Api bindings
  ☆46Updated 2 weeks ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago