Create cwl workflows by writing a simple Python script
☆39Apr 29, 2020Updated 6 years ago
Alternatives and similar repositories for scriptcwl
Users that are interested in scriptcwl are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Jul 29, 2019Updated 7 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Apr 13, 2026Updated 5 months ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Jun 9, 2020Updated 6 years ago
- IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.☆17May 5, 2026Updated 4 months ago
- ☆11Oct 21, 2016Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- A new open source tool to run CWL workflows on LSF☆37Nov 24, 2022Updated 3 years ago
- Contains a set of Galaxy Tools mostly written by the Galaxy Team.☆37Jul 30, 2026Updated last month
- StreamFlow Workflow Manager☆65Updated this week
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Visualizer of CWL (Common Workflow Language) workflows for Vue☆30Dec 7, 2022Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).☆936Updated this week
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Feb 10, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Documentation for PEP specification and all PEPkit software☆10Updated this week
- The WES API is a standard way to run and manage portable workflows.☆94Jun 11, 2026Updated 3 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆16Mar 4, 2019Updated 7 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 3 years ago
- Write CWL in R☆15May 9, 2024Updated 2 years ago
- Deprecated☆101Aug 12, 2019Updated 7 years ago
- Pan gGnome Viewer☆10Updated this week
- ☆10Aug 28, 2025Updated last year
- Import a CWL workflow specification to Nextflow script (experimental)☆27Aug 9, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL …☆30Updated this week
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆81Mar 25, 2025Updated last year
- CWL for GDC DNASeq workflows☆24Sep 10, 2026Updated last week
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- Python package to extend Airflow functionality with CWL1.1 support☆194Oct 25, 2023Updated 2 years ago
- Semantic Annotations for Linked Avro Data☆86Updated this week
- Common Workflow Language reference implementation☆376Updated this week
- Run Python functions locally or in the cloud. Built for computational science.☆22Oct 4, 2023Updated 2 years ago
- Java SDK for the Common Workflow Language standards☆16Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Mar 31, 2018Updated 8 years ago
- Computer-Aided Process Planner (CAPP) for Synthetic Biology Research☆11Jun 1, 2021Updated 5 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Aug 18, 2026Updated last month
- Accumulating container resource usage with workflow metadata☆19Mar 17, 2021Updated 5 years ago
- The Gen3 Workflow Execution Service☆10Mar 11, 2022Updated 4 years ago
- A web application to view and share Common Workflow Language workflows☆52Updated this week
- A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that c…☆13Oct 19, 2018Updated 7 years ago