NLeSC / scriptcwlLinks
Create cwl workflows by writing a simple Python script
☆40Updated 5 years ago
Alternatives and similar repositories for scriptcwl
Users that are interested in scriptcwl are comparing it to the libraries listed below
Sorting:
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 5 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 7 months ago
- Python utilities for CWL☆39Updated last week
- WDL plugin for pytest☆48Updated last year
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 5 months ago
- SevenBridges Python Api bindings☆46Updated 4 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 3 weeks ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆18Updated 2 years ago
- ☆87Updated last month
- Galaxy Workflow Format 2☆9Updated 3 months ago
- ☆11Updated 8 years ago
- IPython running in a docker container. This image can be used to integrate IPython into Galaxy☆17Updated 9 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated 8 months ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- BioContainers specifications☆51Updated 2 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated last week
- ☆16Updated last year