NLeSC / scriptcwlLinks
Create cwl workflows by writing a simple Python script
☆40Updated 5 years ago
Alternatives and similar repositories for scriptcwl
Users that are interested in scriptcwl are comparing it to the libraries listed below
Sorting:
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 5 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 9 months ago
- WDL plugin for pytest☆48Updated 2 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated last week
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Python utilities for CWL☆39Updated last week
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- Configure workflow/pipeline tests using yaml files.☆68Updated last year
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 6 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- ☆88Updated 2 months ago
- BioContainers specifications☆52Updated 2 years ago
- This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…☆23Updated 4 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆43Updated last year
- X things you should take into consideration if you code for big data analysis☆23Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 2 weeks ago
- Big Data Bag Utilities☆50Updated last month
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 2 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Dockerfiles to build Biopython instances☆28Updated 8 years ago
- A translator from WDL to CWL v1.2☆27Updated last week
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- SevenBridges Python Api bindings☆46Updated 5 months ago
- An easy-to-use way for running Galaxy workflows.☆20Updated 5 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated this week