Alternatives and similar repositories for scriptcwl

Users that are interested in scriptcwl are comparing it to the libraries listed below

• hexylena / argparse2tool
  transparently build CWL and Galaxy XML tool definitions for any script that uses argparse
  ☆27Updated 11 months ago
• common-workflow-lab / python-cwlgen
  Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement
  ☆29Updated 5 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• LUMC / pytest-workflow
  Configure workflow/pipeline tests using yaml files.
  ☆69Updated last year
• ga4gh / workflow-execution-service-schemas
  The WES API is a standard way to run and manage portable workflows.
  ☆85Updated last month
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆15Updated 4 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• common-workflow-language / cwl-utils
  Python utilities for CWL
  ☆40Updated last week
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• common-workflow-language / workflow-service
  Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows
  ☆36Updated last week
• BioContainers / specs
  BioContainers specifications
  ☆52Updated 2 years ago
• common-workflow-lab / wdl-cwl-translator
  A translator from WDL to CWL v1.2
  ☆27Updated 3 weeks ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• common-workflow-lab / gxargparse
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Updated 6 years ago
• ga4gh / task-execution-schemas
  ☆91Updated last month
• galaxyproject / galaxy-lib
  Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.
  ☆12Updated 5 years ago
• elixir-europe / BioHackathon-projects-2019
  This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage proje…
  ☆24Updated 4 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• common-workflow-lab / ipython2cwl
  IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
  ☆17Updated this week
• inutano / cwl-metrics
  Accumulating container resource usage with workflow metadata
  ☆19Updated 4 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 7 years ago
• workflux / workflUX
  An open-source, cloud-ready web application for simplified deployment of big data workflows.
  ☆33Updated 4 months ago
• atyryshkina / algorithm-performance-analysis
  ☆13Updated 7 years ago
• pycogent / pycogent
  PyCogent: Official repository for software and unit tests
  ☆91Updated 4 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 3 years ago
• galaxyproject / galaxy-beta1
  Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…
  ☆12Updated 10 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• fair-research / bdbag
  Big Data Bag Utilities
  ☆51Updated last week