NLeSC / scriptcwl
Create cwl workflows by writing a simple Python script
☆40Updated 5 years ago
Alternatives and similar repositories for scriptcwl
Users that are interested in scriptcwl are comparing it to the libraries listed below
Sorting:
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 4 years ago
- transparently build CWL and Galaxy XML tool definitions for any script that uses argparse☆27Updated 6 months ago
- Python utilities for CWL☆39Updated 2 months ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated this week
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- WDL plugin for pytest☆48Updated last year
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- ☆11Updated 8 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆33Updated 10 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Galaxy Workflow Format 2☆9Updated 2 months ago
- A translator from WDL to CWL v1.2☆27Updated 3 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- High throughput, pain-free big data pipelines.☆30Updated 8 years ago
- ☆10Updated 6 months ago
- GA4GH Task Execution Service Root Project + Deployment scripts on Kubernetes☆41Updated 4 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- biotoolsSchema : Tool description data model for computational tools in life sciences☆38Updated last year
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Simon's Data Club - Reference data for Galaxy servers☆10Updated last year
- SevenBridges Python Api bindings☆46Updated 3 months ago
- ☆84Updated 2 months ago
- BioThings API framework - Making high-performance API for biological annotation data☆47Updated last week
- Workflow Execution Service Backend☆18Updated last week
- The WES API is a standard way to run and manage portable workflows.☆85Updated 7 months ago
- Configure workflow/pipeline tests using yaml files.☆68Updated 9 months ago
- a place for GA4GH-related wiki pages☆16Updated 7 years ago