ga4gh / ga4gh-schemasLinks
Models and APIs for Genomic data. RETIRED 2018-01-24
☆218Updated 2 years ago
Alternatives and similar repositories for ga4gh-schemas
Users that are interested in ga4gh-schemas are comparing it to the libraries listed below
Sorting:
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- HGVS variant name parsing and generation☆174Updated 2 years ago
- Extensible specification for representing and uniquely identifying biological sequence variation☆88Updated 2 months ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆197Updated 4 years ago
- Server wrapper that turns command line tools into web services☆61Updated 6 years ago
- GA4GH Variation Representation Python Implementation☆57Updated this week
- a lightweight db framework for exploring genetic variation.☆322Updated 5 years ago
- GenomicsDB☆111Updated 2 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆87Updated 7 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- de novo sequence assembler using string graphs☆241Updated 5 years ago
- A genotype query interface.☆135Updated 4 years ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- Tools for processing and analyzing structural variants.☆152Updated 3 years ago
- C++ Library to parse Illumina InterOp files☆78Updated last week
- NGS Language Bindings☆119Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆377Updated last year
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Collect of SO Ontologies☆100Updated 7 months ago
- MyVariant.info: A BioThings API for human variant annotations☆95Updated last month
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆84Updated 8 months ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated last week
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆202Updated 4 years ago
- A flexible framework for rapid genome analysis and interpretation☆317Updated 2 years ago
- This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file…☆125Updated 5 years ago
- Canvas - Copy number variant (CNV) calling from DNA sequencing data☆128Updated 5 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago