KamilSJaron / generic_genomicsLinks
small scripts, functions or bits of code for parsing genomic data
☆14Updated 3 years ago
Alternatives and similar repositories for generic_genomics
Users that are interested in generic_genomics are comparing it to the libraries listed below
Sorting:
- Population Genomics in R workshop☆12Updated last year
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 7 years ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- ☆15Updated 5 years ago
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆18Updated last week
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Updated 4 years ago
- Course in population genomics at BiRC☆12Updated 7 months ago
- Killifish genomics scripts☆12Updated 4 years ago
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Updated 2 months ago
- ☆45Updated 9 months ago
- Scripts to convert between file formats for various analyses☆16Updated 7 months ago
- ☆11Updated 3 years ago
- ☆11Updated 5 years ago
- ☆16Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12Updated 7 months ago
- Pipelines for Drosophila genome assembly and analysis☆16Updated 3 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated last week
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- visualization of phylogenetic output files☆14Updated 2 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated 2 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Updated 4 years ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago
- ☆14Updated 3 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 2 months ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- issues for semina "Data Visulization"☆13Updated this week