KamilSJaron / generic_genomics
small scripts, functions or bits of code for parsing genomic data
☆14Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for generic_genomics
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Population genetics analyses☆22Updated 5 years ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 8 months ago
- Population Genomics in R workshop☆12Updated 7 months ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 6 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 5 years ago
- ☆32Updated 3 years ago
- Scripts to convert between file formats for various analyses☆14Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last week
- General purpose population genetics software☆12Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 4 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Killifish genomics scripts☆12Updated 3 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 6 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- A pipeline for assemble chroloplast genome using short/long reads☆9Updated 2 years ago
- ☆28Updated this week
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆23Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 weeks ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- A haplotype analysis toolkit for natural variation study.☆27Updated last year
- Transposable element polymorphism identification☆32Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago