☆16May 6, 2026Updated 5 months ago
Alternatives and similar repositories for SpatialQM
Users that are interested in SpatialQM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library for interfacing with SpatialData stores in TS/JS☆11Updated this week
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- ☆39Jan 22, 2026Updated 9 months ago
- ☆30Jan 31, 2026Updated 8 months ago
- ☆16Oct 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Profile purification of single-cell spatial transcriptomics data☆67Jun 29, 2026Updated 4 months ago
- ☆12Aug 6, 2024Updated 2 years ago
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 7 months ago
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- Gene-Term Enrichment Analysis (GeneTEA)☆11Jun 10, 2026Updated 4 months ago
- R package for transcriptomic biological age analysis☆29Sep 29, 2026Updated last month
- ☆17Nov 1, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- A toolbox for sparse contrastive principal component analysis☆12Feb 10, 2025Updated last year
- ☆10Mar 6, 2025Updated last year
- Code used to benchmark Xenium☆88Apr 10, 2026Updated 6 months ago
- Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images☆10May 5, 2019Updated 7 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆21Mar 31, 2024Updated 2 years ago
- Code for the blogpost showing how to use Paquo to interact with, and classify, objects in QuPath with machine learning☆10Sep 6, 2022Updated 4 years ago
- Design tool for highly performant qPCR diagnostics.☆12Updated this week
- Repository for meK-Means Inference Method☆10Aug 7, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- ☆12Apr 25, 2026Updated 6 months ago
- MERFISH decoding software☆30Aug 16, 2025Updated last year
- Bayesian Analytics for Spatial Segmentation☆34May 4, 2025Updated last year
- Spatial omics analysis toolbox☆20Sep 29, 2026Updated last month
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆199Oct 17, 2026Updated last week
- Python bindings for SingleR☆16Aug 14, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial transcriptomics analyses and decoding in R☆27Jul 8, 2026Updated 3 months ago
- SPatial Omics Oxford Analysis Pipeline☆12Jul 26, 2024Updated 2 years ago
- ☆13Nov 20, 2023Updated 2 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- ☆19Mar 31, 2026Updated 6 months ago
- Spatial analysis of FISH data☆32Jun 5, 2026Updated 4 months ago