Code for the blogpost showing how to use Paquo to interact with, and classify, objects in QuPath with machine learning
☆10Sep 6, 2022Updated 4 years ago
Alternatives and similar repositories for QuPathPaquoIntegration
Users that are interested in QuPathPaquoIntegration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trained models for use with QuPath☆16Jun 25, 2026Updated 4 months ago
- QuPath extension to interactively align images☆30Aug 7, 2025Updated last year
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 5 years ago
- The repository provide augment function of "Stain mix-up: Unsupervised domain generalization for histopathology images"☆13Feb 22, 2022Updated 4 years ago
- ☆21Aug 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An interactive machine learning framework for large histopathology images.☆21Dec 27, 2023Updated 2 years ago
- Intelligent data partitioning using quality control metrics☆18Jun 10, 2025Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 10 months ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- ☆19Jul 28, 2021Updated 5 years ago
- QuPath extension to run StarDist nucleus detection☆50Jun 25, 2026Updated 4 months ago
- ☆11Aug 4, 2026Updated 2 months ago
- Coincides with blogpost for using geojson and shapely☆32Nov 16, 2020Updated 5 years ago
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 🌸 Breast epithelium segmentation through IHC-guided supervision☆11Apr 23, 2024Updated 2 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆13Dec 8, 2021Updated 4 years ago
- ☆33May 2, 2024Updated 2 years ago
- A web-based system for learning pathology☆14Aug 3, 2026Updated 2 months ago
- Python 3 library for the augmentation & normalization of H&E images☆66Sep 12, 2022Updated 4 years ago
- Open source whole slide image preparation and viewing pipeline☆14Mar 16, 2020Updated 6 years ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- A tool for training machine-learning models with whole-slide imaging datasets☆26Dec 27, 2023Updated 2 years ago
- ☆16Oct 11, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆11Sep 3, 2021Updated 5 years ago
- An open-source digital pathology based rapid image annotation tool☆93Aug 21, 2026Updated 2 months ago
- ☆28May 15, 2023Updated 3 years ago
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated 2 years ago
- KimiaPath24: Dataset for retrieval and classification in digital pathology☆13Jun 4, 2017Updated 9 years ago
- A Girder plugin for exposing slicer execution model's CLI modules over the web☆18Updated this week
- An implementation of Unet for pytorch designed for digital pathology segmentation☆128Aug 23, 2022Updated 4 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Hasktorch two-layer network example project☆13Nov 21, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆58Apr 16, 2021Updated 5 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- Embedding of python interpreter into haskell programs☆19Oct 15, 2026Updated last week
- ☆16Jan 18, 2023Updated 3 years ago
- QuPath - Open-source bioimage analysis for research☆51Updated this week
- Med-NCA: Robust and Lightweight Segmentation with Neural Cellular Automata☆14Jun 2, 2023Updated 3 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆28Feb 23, 2024Updated 2 years ago