☆17Feb 6, 2020Updated 6 years ago
Alternatives and similar repositories for MDeep
Users that are interested in MDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code depository for papers☆27Oct 22, 2025Updated 6 months ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆11Feb 18, 2021Updated 5 years ago
- Course material for Enrichment analysis course by SIB☆13Feb 2, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Updated this week
- Deep learning-based language model for glycan sequences☆17Jan 17, 2020Updated 6 years ago
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago
- Paired-seq☆15Jul 17, 2024Updated last year
- A set of SPARQL examples that are used in different SIB resources☆33Apr 20, 2026Updated 2 weeks ago
- ☆28Jan 28, 2020Updated 6 years ago
- de.NBI Nanopore Training Course☆21Jun 13, 2025Updated 10 months ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- ☆12Jun 18, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GitHub for the SIB courses NGS - Genome variant analysis☆27Apr 16, 2026Updated 2 weeks ago
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆21Apr 15, 2026Updated 2 weeks ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Mar 2, 2023Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- ☆17Jul 29, 2021Updated 4 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Aug 29, 2019Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 5 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆17Apr 19, 2026Updated 2 weeks ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆166Feb 13, 2026Updated 2 months ago
- ☆17Sep 20, 2020Updated 5 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Apr 10, 2023Updated 3 years ago
- ☆37Apr 7, 2026Updated 3 weeks ago
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆13Jan 14, 2023Updated 3 years ago
- PROTACable is an end-to-end in-silico design toolkit for novel PROTACs☆29Jun 3, 2024Updated last year
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 3 years ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Mar 12, 2018Updated 8 years ago
- Bioinformatics for Benched Biologists☆21Apr 30, 2020Updated 6 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago