☆17Feb 6, 2020Updated 6 years ago
Alternatives and similar repositories for MDeep
Users that are interested in MDeep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆26Jan 15, 2026Updated 3 months ago
- Code depository for papers☆27Oct 22, 2025Updated 5 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- ☆11Feb 18, 2021Updated 5 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Mar 26, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Find Co-Abundant Groups of Genes☆11Aug 3, 2020Updated 5 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- Introduction to Snakemake for Bioinformatics☆22Apr 7, 2026Updated last week
- ☆12Dec 7, 2019Updated 6 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 2 years ago
- ☆12Jun 18, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predicting Activated Sludge Microbial Communities based on time series of continuous sludge samples by using graph neural networks☆20Mar 26, 2026Updated 2 weeks ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Supplementary data for co-occurrence manuscript☆10Dec 19, 2019Updated 6 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Mar 2, 2023Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Aug 29, 2019Updated 6 years ago
- ☆32Jan 27, 2026Updated 2 months ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single Cell Generative Adversarial Network (scGAN)☆15May 29, 2020Updated 5 years ago
- COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R☆16Mar 2, 2026Updated last month
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆164Feb 13, 2026Updated 2 months ago
- ☆17Sep 20, 2020Updated 5 years ago
- ☆35Apr 7, 2026Updated last week
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆12Apr 25, 2022Updated 3 years ago
- PROTACable is an end-to-end in-silico design toolkit for novel PROTACs☆29Jun 3, 2024Updated last year
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Mar 12, 2018Updated 8 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆14Jun 30, 2019Updated 6 years ago
- a deep learning approach for integrative cancer subtyping of multi-omics data☆40May 5, 2024Updated last year
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Jan 8, 2024Updated 2 years ago
- Compilation of tutorials for RevBayes☆23Aug 20, 2018Updated 7 years ago