Alternatives and similar repositories for MDeep:

Users that are interested in MDeep are comparing it to the libraries listed below

• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated last year
• SegataLab / metaml
  ☆27Updated 4 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated last year
• erinhwilson / promoter-id-from-rnaseq
  Computational framework to identify promoter sequences from RNA-seq datasets
  ☆10Updated last year
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆35Updated 7 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆21Updated 3 years ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆24Updated 9 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆30Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆30Updated 2 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆48Updated 5 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆28Updated 4 years ago
• andreasmock / MetaboDiff
  ☆30Updated 4 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆40Updated 9 months ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆61Updated 3 months ago
• andrewrech / antigen.garnish
  ☆47Updated 2 years ago
• mdozmorov / RNA-seq_notes
  A continually expanding collection of RNA-seq tools
  ☆47Updated 3 months ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆23Updated last year
• crazyhottommy / oneliner_100day_challenge
  Bioinformatics one-liner for 100 days
  ☆43Updated 9 months ago
• BackofenLab / IntaRNA
  Efficient target prediction incorporating accessibility of interaction sites
  ☆46Updated 2 months ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆90Updated 10 months ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆22Updated 8 months ago
• crazyhottommy / machine-learning-resource
  ☆74Updated last month
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆28Updated this week
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆22Updated this week
• etirouthier / keras_dna
  ☆23Updated 3 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆21Updated 5 years ago