Alternatives and similar repositories for MDeep

Users that are interested in MDeep are comparing it to the libraries listed below

• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆34Updated 2 years ago
• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 10 months ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆38Updated 8 years ago
• etirouthier / keras_dna
  ☆26Updated 4 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆62Updated 2 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 3 weeks ago
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• erinhwilson / promoter-id-from-rnaseq
  Computational framework to identify promoter sequences from RNA-seq datasets
  ☆11Updated 2 years ago
• crazyhottommy / machine-learning-resource
  ☆84Updated last year
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆32Updated 4 months ago
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• dwgoon / nezzle
  Network Visualization using both GUI and Programming
  ☆29Updated 6 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• kuanrongchan / STAGES
  ☆36Updated 9 months ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated 4 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• baoilleach / BioinformaticsPracticals
  Practical Introduction to Bioinformatics and Systems Biology with R (mainly)
  ☆20Updated 15 years ago
• IBPA / DeepPep
  Deep proteome inference from peptide profiles
  ☆13Updated 5 years ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 8 months ago
• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• glasgowcompbio / pyMultiOmics
  Python toolbox for multi-omics data mapping and analysis
  ☆27Updated 2 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year
• Legana / ampir
  antimicrobial peptide prediction in R
  ☆33Updated 11 months ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆28Updated 3 months ago