lichen-lab / MDeepLinks
☆15Updated 5 years ago
Alternatives and similar repositories for MDeep
Users that are interested in MDeep are comparing it to the libraries listed below
Sorting:
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated 2 years ago
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆31Updated 4 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆26Updated last year
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- NastyBugs: a simple method for extracting antimicrobial resistance information from metagenomes☆21Updated 6 years ago
- Time-Course Multi-Omics data integration☆25Updated last year
- MicroPheno Project☆13Updated 2 years ago
- A manually curated database of human gut metabolic modules.☆18Updated 6 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆31Updated 2 years ago
- ☆30Updated 4 years ago
- ☆30Updated 9 months ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆27Updated 7 months ago
- ☆33Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- gatk4 RNA variant calling pipeline☆47Updated last month
- A collection of useful functions for bioinformatics data analysis☆22Updated 11 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…☆12Updated 2 years ago
- visual analysis of your VCF files☆33Updated 2 years ago
- Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut☆10Updated 11 months ago
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆35Updated 4 months ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- a novel encoding method for viral identification in metagenomics☆15Updated last year
- Analysis framework for integrating gut microbiome and host gene expression data☆32Updated 3 years ago
- pathway based data integration and visualization☆41Updated 2 months ago
- Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.☆14Updated 8 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- A python package and a set of shell commands to handle GTF files☆48Updated 11 months ago