Alternatives and similar repositories for MDeep

Users that are interested in MDeep are comparing it to the libraries listed below

• SchlossLab / Topcuoglu_ML_mBio_2020
  Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data
  ☆31Updated 5 years ago
• JanZrimec / DeepExpression
  ☆33Updated 3 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆35Updated 2 years ago
• widdowquinn / 2018-03-06-ibioic
  Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.
  ☆20Updated 7 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆62Updated 2 years ago
• SegataLab / metaml
  ☆34Updated last year
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 9 years ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆38Updated 8 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 11 months ago
• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆39Updated 3 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• crazyhottommy / machine-learning-resource
  ☆84Updated last year
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆43Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• SegataLab / hclust2
  Hclust2 is a handy tool for plotting heat-maps with several useful options to produce high quality figures that can be used in publicatio…
  ☆12Updated 2 years ago
• erinhwilson / promoter-id-from-rnaseq
  Computational framework to identify promoter sequences from RNA-seq datasets
  ☆11Updated 2 years ago
• kuanrongchan / STAGES
  ☆36Updated 10 months ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆32Updated 5 months ago
• scikit-bio / scikit-bio-tutorials
  Interactive tutorials for using scikit-bio in biological research
  ☆55Updated 4 months ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated 2 weeks ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆25Updated 2 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆26Updated 6 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆46Updated 9 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• ThieleLab / CodeBase
  Code depository for papers
  ☆27Updated 2 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago