nitinagarwal / Mouse_Brain_Registration
Geometry Processing of Conventionally Produced Mouse Brain Slice Images
☆7Updated 5 years ago
Alternatives and similar repositories for Mouse_Brain_Registration:
Users that are interested in Mouse_Brain_Registration are comparing it to the libraries listed below
- https://nutil.readthedocs.io/en/latest/☆12Updated 2 weeks ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆21Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 4 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Standalone cellfinder cell detection algorithm☆19Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- ☆10Updated last month
- Brainways☆16Updated last week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Segmentation of anatomical structures in a common coordinate space☆30Updated 2 weeks ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆9Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated 2 weeks ago
- Loading and saving of image data.☆10Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated 2 weeks ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated 5 months ago
- 3-D imaging visualisation through slicing☆29Updated 2 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated 2 weeks ago
- Visualise brainreg registration output☆10Updated 3 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated last year
- ☆17Updated last year
- ☆18Updated 2 years ago
- CloudReg☆11Updated 11 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆38Updated 2 weeks ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated last month