Alternatives and similar repositories for Mouse_Brain_Registration

Users that are interested in Mouse_Brain_Registration are comparing it to the libraries listed below

• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated 2 years ago
• bkntr / brainways
  Brainways
  ☆18Updated last month
• AllenCell / napari-allencell-segmenter
  A plugin that enables image segmentation provided by Allen Institute for Cell Science
  ☆16Updated last year
• esgomezm / microscopy-dl-suite-tf
  Deep Learning segmentation suite designed for 2D microscopy image segmentation
  ☆10Updated 3 years ago
• chanzuckerberg / napari-plugin-alfa-cohort
  Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration
  ☆11Updated 4 years ago
• JaneliaSciComp / awesome-janelia-software
  A curated list of awesome Janelia software
  ☆17Updated 4 months ago
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated this week
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆15Updated 2 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆30Updated 6 months ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 3 months ago
• brainglobe / bg-brainrender-gui
  A GUI built on brainrender: visualise brain regions, neurons and labelled cells.
  ☆12Updated 4 years ago
• BioimageAnalysisCoreWEHI / napari_lattice
  Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …
  ☆13Updated last month
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• ankilab / DeepD3
  ☆22Updated 4 months ago
• Neural-Systems-at-UIO / nutil
  https://nutil.readthedocs.io/en/latest/
  ☆13Updated 2 weeks ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆18Updated last month
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last week
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆23Updated 3 years ago
• CAVEconnectome / nglui
  ☆12Updated last week
• brainglobe / napari-brainreg
  Visualise brainreg registration output
  ☆10Updated 3 years ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated 2 years ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• brainglobe / imio
  Loading and saving of image data.
  ☆10Updated last year
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆26Updated last week
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆19Updated last year
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 8 months ago
• adamshch / SEUDO
  ☆8Updated 3 years ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago