SWC-Advanced-Microscopy / StitchItLinks
Stitching of large tiled datasets
☆21Updated 10 months ago
Alternatives and similar repositories for StitchIt
Users that are interested in StitchIt are comparing it to the libraries listed below
Sorting:
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated 3 months ago
- Tools for distributed alignment of massive images☆92Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 3 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- ☆19Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 4 months ago
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- Process images using SimpleITK in napari☆23Updated 9 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 10 months ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated 2 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 8 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 3 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- python tools for BigDataViewer☆22Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated last week