SWC-Advanced-Microscopy / StitchIt

Related projects ⓘ

Alternatives and complementary repositories for StitchIt

• mobie / mobie
  MultiModal Big Image Data Sharing and Exploration
  ☆14Updated last year
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆75Updated last week
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆27Updated this week
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆21Updated 3 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆51Updated last year
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆37Updated 3 weeks ago
• JaneliaSciComp / BigStitcher-Spark
  Running compute-intense parts of BigStitcher distributed
  ☆20Updated last week
• RoccoDAnt / napari-zelda
  ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
  ☆20Updated 3 months ago
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆16Updated this week
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 11 months ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆26Updated 6 months ago
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated last month
• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆28Updated this week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆31Updated 2 years ago
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆21Updated last year
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆58Updated last year
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆34Updated last month
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆22Updated 3 years ago
• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated last year
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆19Updated last month
• lens-biophotonics / ZetaStitcher
  ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
  ☆39Updated 2 months ago
• embl-cba / elastixWrapper
  ☆13Updated 2 years ago
• haesleinhuepf / imagejmacromarkdown
  Generate markdown notebooks from ImageJ Macro
  ☆23Updated 3 years ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆51Updated 4 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 3 years ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated last year
• stardist / stardist-napari
  StarDist plugin for napari
  ☆36Updated 2 months ago