SWC-Advanced-Microscopy / StitchIt
Stitching of large tiled datasets
☆18Updated 3 months ago
Alternatives and similar repositories for StitchIt:
Users that are interested in StitchIt are comparing it to the libraries listed below
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- Tools for distributed alignment of massive images☆78Updated this week
- ImgLib2/BDV implementation of Stitching for large datasets☆69Updated 2 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Generate markdown notebooks from ImageJ Macro☆23Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- Easily read and write ome-tiff images in python☆26Updated 8 months ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- python tools for BigDataViewer☆21Updated 2 weeks ago
- Running compute-intense parts of BigStitcher distributed☆21Updated last month
- ImageJ convenience layer for N5☆16Updated last month
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆35Updated last year
- Distributed segmentation for bio-image-analysis☆36Updated 6 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated 6 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆53Updated 2 years ago
- Matlab function to import ROIs from ImageJ☆26Updated 5 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last month
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated last month
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆40Updated 4 months ago
- Python module for registering and fusing multi-view microscopy data☆23Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆23Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆15Updated this week
- ☆17Updated 2 years ago