SWC-Advanced-Microscopy / StitchItLinks
Stitching of large tiled datasets
☆21Updated 7 months ago
Alternatives and similar repositories for StitchIt
Users that are interested in StitchIt are comparing it to the libraries listed below
Sorting:
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 7 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆77Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 4 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- python tools for BigDataViewer☆22Updated 10 months ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- ☆18Updated 3 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 7 months ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆45Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆70Updated 3 weeks ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆33Updated this week
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated 2 weeks ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 5 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 3 weeks ago
- ☆37Updated 3 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated this week
- Particle tracking by solving linear assignment problem.☆60Updated 3 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago