SWC-Advanced-Microscopy / StitchIt
Stitching of large tiled datasets
☆18Updated 3 weeks ago
Alternatives and similar repositories for StitchIt:
Users that are interested in StitchIt are comparing it to the libraries listed below
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated this week
- Tools for distributed alignment of massive images☆81Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 5 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆28Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 4 years ago
- ☆18Updated 3 years ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Updated 2 years ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 weeks ago
- ☆17Updated last week
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- MSSR Plugin☆13Updated 5 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- ImageJ convenience layer for N5☆16Updated 3 weeks ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆18Updated 2 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 weeks ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- Particle tracking by solving linear assignment problem.☆50Updated 2 weeks ago