jambler24 / GenGraphLinks
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
☆51Updated 4 years ago
Alternatives and similar repositories for GenGraph
Users that are interested in GenGraph are comparing it to the libraries listed below
Sorting:
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- A Strategy for Building and Using a Human Reference Pangenome☆71Updated 5 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- Efficient handling of FASTQ files from Python☆51Updated last month
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 3 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Updated 2 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated last year
- A tool for simulating random mutations in any genome☆43Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 7 months ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 10 months ago
- MeShClust: an intelligent tool for clustering DNA sequences☆39Updated 3 years ago
- Implementation of Krona to QIIME2☆16Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 6 years ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- MIRA sequence assembler☆30Updated 11 months ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 7 months ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- Python3 scripts to manipulate FASTA and FASTQ files☆72Updated 9 months ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆26Updated 7 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated 2 weeks ago
- A python package and a set of shell commands to handle GTF files☆50Updated last week