Alternatives and similar repositories for GenGraph:

Users that are interested in GenGraph are comparing it to the libraries listed below

• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆52Updated 11 months ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 4 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• EGA-archive / ont2cram
  Oxford Nanopore HDF/Fast5 to CRAM conversion tool
  ☆22Updated 5 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 3 years ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated 2 months ago
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆25Updated last year
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆53Updated last month
• LUMC / kPAL
  Analysis toolkit and programming library for k-mer profiles
  ☆30Updated 4 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated last year
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆70Updated 4 years ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆46Updated 11 months ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆32Updated 11 months ago
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• OceanGenomics / mudskipper
  A tool for projecting genomic alignments to transcriptomic coordinates
  ☆36Updated 11 months ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• PacificBiosciences / pbAA
  ☆24Updated 2 months ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated last year
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 7 months ago
• NAL-i5K / genomics-workspace
  Django website project for common sequence search tools.
  ☆17Updated 7 months ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 4 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 5 months ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated 8 months ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆29Updated 4 months ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆38Updated last year