Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for precision cancer medicine using Personal Cancer Genome Reporter (PCGR). The pipeline offers germline SNVs/INDELS intepretation and annotation using Cancer Predisposition Sequencing Reporter (CPSR).
☆15Jul 13, 2026Updated last week
Alternatives and similar repositories for variantprioritization
Users that are interested in variantprioritization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Apr 30, 2026Updated 2 months ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Jun 8, 2026Updated last month
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- ☆13Updated this week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆50Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- gatk4 RNA variant calling pipeline☆61Jul 8, 2026Updated last week
- ☆11Apr 25, 2024Updated 2 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- The user can generate Molecular Tumor Board reports for TCGA samples☆15Mar 21, 2020Updated 6 years ago
- Longread PacBio sequencing processing for WGS and PureTarget☆16Jun 25, 2026Updated 3 weeks ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Apr 16, 2026Updated 3 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆19Jun 5, 2026Updated last month
- Grow your own Christmas tree within R using tree architectural models☆13Dec 17, 2019Updated 6 years ago
- ☆13Jul 7, 2026Updated last week
- Influenza genome analysis Nextflow workflow☆27Jun 3, 2026Updated last month
- A bioinformatics pipeline to phase and impute genetic data☆32Jul 6, 2026Updated 2 weeks ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆64Jun 25, 2026Updated 3 weeks ago
- Converts bam or cram files to fastq format and does quality control.☆32Jun 17, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Docker image build for nextstrain/base☆12Jun 24, 2026Updated 3 weeks ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 6, 2026Updated 2 weeks ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Jun 16, 2026Updated last month
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 7 months ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- A GitHub action to install Nextflow☆31Updated this week
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆34Jun 3, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact…☆15Jul 4, 2026Updated 2 weeks ago
- Nextstrain build for novel coronavirus SARS-CoV-2☆11Jan 11, 2021Updated 5 years ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Jul 9, 2026Updated last week
- Pan gGnome Viewer☆10Jul 10, 2025Updated last year
- ☆16Mar 4, 2025Updated last year
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year