Alternatives and similar repositories for docker-base

Users that are interested in docker-base are comparing it to the libraries listed below

• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 9 months ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆36Updated 3 years ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated 8 months ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆66Updated 7 months ago
• enasequence / webin-cli
  Webin command line submission program.
  ☆38Updated 4 months ago
• replikation / poreCov
  SARS-CoV-2 workflow for nanopore sequence data
  ☆42Updated last month
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆94Updated 2 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 3 years ago
• WGS-standards-and-analysis / datasets
  Benchmark datasets for WGS analysis
  ☆39Updated 6 years ago
• iqtree / piqtree
  A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference
  ☆41Updated this week
• corneliusroemer / pango-sequences
  Consensus sequences for each Pango lineage
  ☆23Updated 7 months ago
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆59Updated 2 years ago
• dib-lab / 2018-ncbi-lineages
  Extract lineage CSVs from NCBI for use with sourmash lca.
  ☆29Updated 2 years ago
• JordyCoolen / easyseq_covid19
  Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…
  ☆15Updated 3 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• BDI-pathogens / phyloscanner
  Phylogenetics between and within hosts at once, all along the genome.
  ☆50Updated last year
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆33Updated 7 years ago
• BackofenLab / CRISPRidentify
  ☆31Updated last year
• epruesse / SINA
  SINA - Reference based multiple sequence alignment
  ☆41Updated 5 years ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆72Updated this week
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆38Updated 2 weeks ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆46Updated 3 years ago
• nf-core / multiplesequencealign
  A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
  ☆40Updated 2 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆81Updated last week
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆20Updated last year
• epi2me-labs / wf-clone-validation
  ☆39Updated last month
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆113Updated last year