Alternatives and similar repositories for ncov_cluster:

Users that are interested in ncov_cluster are comparing it to the libraries listed below

• emmahodcroft / cluster-picker-and-cluster-matcher
  For all your cluster needs
  ☆16Updated 2 years ago
• lenaschimmel / sc2rf
  SARS-Cov-2 Recombinant Finder for fasta sequences
  ☆49Updated 2 years ago
• nextstrain / auspice.us
  ☆13Updated 2 months ago
• nextstrain / ncov-ingest
  A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…
  ☆36Updated this week
• nextstrain / nextstrain.org
  The Nextstrain website
  ☆96Updated this week
• GenSpectrum / LAPIS
  An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2
  ☆21Updated this week
• theosanderson / taxonium
  A tool for exploring large trees in the browser
  ☆108Updated last week
• artic-network / civet
  Cluster Investigation & Virus Epidemiology Tool
  ☆50Updated 2 years ago
• cambiotraining / sars-cov-2-genomics
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis
  ☆14Updated 7 months ago
• flu-crew / smot
  Simple Manipulation Of Trees
  ☆13Updated 2 years ago
• outbreak-info / outbreak.api
  The data API server for outbreak.info
  ☆11Updated 2 months ago
• ukhsa-collaboration / variant_definitions
  ☆74Updated last year
• ukhsa-collaboration / ena_submission
  ☆11Updated 6 years ago
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• genomic-medicine-sweden / gms-artic
  A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbio…
  ☆10Updated 5 months ago
• W-L / ProblematicSites_SARS-CoV2
  ☆48Updated 3 years ago
• maximilianh / multiSub
  Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…
  ☆35Updated 2 years ago
• cov-lineages / scorpio
  serious constellations of reoccurring phylogenetically-independent origin
  ☆39Updated last year
• sdellicour / seraphim
  R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…
  ☆33Updated last month
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆30Updated this week
• GenSpectrum / cov-spectrum-website
  A web platform to detect and analyze variants of SARS-CoV-2
  ☆61Updated 3 weeks ago
• CDCgov / datasets-sars-cov-2
  Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
  ☆54Updated 2 years ago
• andersonbrito / subsampler
  ☆13Updated 2 years ago
• INSaFLU / INSaFLU
  INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…
  ☆33Updated this week
• husonlab / dendroscope3
  Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks
  ☆44Updated last year
• CDCgov / tostadas
  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
  ☆27Updated this week
• aineniamh / squirrel
  ☆12Updated last week
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• lubianat / ann
  A repository for brainstorming and prototyping ideas related to the eLifeSprint project Annotate them all (https://sprint.elifesciences.o…
  ☆15Updated 3 years ago
• cov-lineages / pangoLEARN
  Store of the trained model for pangolin to access.
  ☆55Updated 2 years ago