Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
☆24Oct 30, 2026Updated this week
Alternatives and similar repositories for metaboigniter
Users that are interested in metaboigniter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The tools that constitute a nontargeted LCMS metabolomics data processing pipeline, created and used by the Broad Institute Metabolomics …☆15Updated this week
- High level functionality to support and simplify metabolomics data annotation.☆21Aug 5, 2026Updated 2 months ago
- OpenAPI based libraries for different programming languages like R and Python☆26Sep 23, 2026Updated last month
- Batch effects removal method based on deep autoencoder and adversarial learning☆25Dec 28, 2024Updated last year
- R Interface to the Metabolights REST API☆12Jun 10, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- ☆11Nov 30, 2024Updated last year
- Mass Spec Query Language (MassQL) support for Spectra☆10Apr 30, 2026Updated 6 months ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆70Oct 26, 2026Updated last week
- ☆16Jan 27, 2022Updated 4 years ago
- A processing pipeline for the summarization, normalization and diagnostics of mass spectrometry–based metabolomics data.☆10Jan 17, 2026Updated 9 months ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆25Nov 11, 2024Updated last year
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆22Aug 7, 2024Updated 2 years ago
- Realtime quality control for mass spectrometry data acquisition☆22May 19, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nextflow-powered MS-DIAL☆15May 30, 2026Updated 5 months ago
- ☆21Sep 7, 2026Updated last month
- R Shiny tool to interactively visualize and analyze antibody repertoires☆11Jan 8, 2024Updated 2 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- ☆10Mar 30, 2026Updated 7 months ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆11May 14, 2026Updated 5 months ago
- Scalable and self-optimizing processing workflow for untargeted LC-MS☆33Aug 3, 2024Updated 2 years ago
- Data visualization on metabolic pathway maps.☆12Apr 7, 2020Updated 6 years ago
- ☆12Feb 20, 2026Updated 8 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Jul 20, 2022Updated 4 years ago
- Variational autoencoders learn universal latent representations of metabolomics data (supplementary code)☆14Jun 12, 2022Updated 4 years ago
- ☆11Oct 6, 2026Updated 3 weeks ago
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆58Aug 1, 2024Updated 2 years ago
- SLAMSeq processing and analysis pipeline☆10May 9, 2024Updated 2 years ago
- ☆17Oct 5, 2026Updated 3 weeks ago
- Interactive software to analyze and browse mass spectrometry data☆21Jul 3, 2025Updated last year
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated 2 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- data processing for MS-based metabolomics☆15May 28, 2026Updated 5 months ago
- From metagenomes to epitopes and beyond☆12Oct 26, 2026Updated last week
- R package for optimized LC-MS spectra processing☆31Updated this week
- R Interface to the ClassyFire REST API☆15Aug 21, 2026Updated 2 months ago
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆19Sep 15, 2026Updated last month
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆26Jul 28, 2026Updated 3 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆33Jan 5, 2025Updated last year