Nextstrain build for SARS-CoV-2
☆1,359Jun 9, 2026Updated last week
Alternatives and similar repositories for ncov
Users that are interested in ncov are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline components for real-time phylodynamic analysis☆277Updated this week
- Web app for visualizing pathogen evolution☆311Jun 11, 2026Updated last week
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆348Apr 12, 2023Updated 3 years ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆454Jun 10, 2026Updated last week
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated 3 weeks ago
- The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize patho…☆28Updated this week
- The Nextstrain website☆96Jun 11, 2026Updated last week
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated 2 weeks ago
- ☆51Mar 11, 2022Updated 4 years ago
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆126Feb 3, 2023Updated 3 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆253Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Phylodynamic estimation of nCoV incidence and prevalence☆19Feb 14, 2020Updated 6 years ago
- Nextstrain build for mpox virus☆50Updated this week
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- The ARTIC fieldbioinformatics pipeline☆133Updated this week
- Repository for suggesting new lineages that should be added to the current scheme☆1,074Jun 10, 2026Updated last week
- A tool for exploring large trees in the browser☆133May 7, 2026Updated last month
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆115Updated this week
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- viral-ngs: command line tools and wrappers for processing raw viral genomic data☆196Updated this week
- A public repository of scientific and media resources of SARS-CoV-2 related COVID-19☆17Dec 18, 2021Updated 4 years ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- Scripts. config, and snakefiles for seasonal-flu nextstrain builds☆62Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- ☆27Aug 2, 2023Updated 2 years ago
- de novo virus assembler of Illumina paired reads☆59May 17, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 2 months ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- Programmatically interact with the GISAID database.☆82Aug 5, 2025Updated 10 months ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆135Jun 10, 2026Updated last week
- Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.☆323Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆42Feb 26, 2026Updated 3 months ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year