cov-lineages / pango-designation
Repository for suggesting new lineages that should be added to the current scheme
☆1,050Updated this week
Alternatives and similar repositories for pango-designation:
Users that are interested in pango-designation are comparing it to the libraries listed below
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆433Updated 3 weeks ago
- Repository to propose and discuss lineages☆47Updated last month
- Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.☆320Updated last week
- Informal summaries of notable SARS-CoV-2 lineages☆108Updated this week
- Nextstrain build for SARS-CoV-2☆1,353Updated this week
- ☆11Updated 8 months ago
- Raw nanopore signal mapper that enables real-time targeted sequencing☆527Updated last year
- A web platform to detect and analyze variants of SARS-CoV-2☆61Updated last month
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Updated 2 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆229Updated this week
- International SARS-CoV-2 surveillance☆36Updated last year
- This is a one-off Nextstrain build for SARS-like coronaviruses☆81Updated 4 years ago
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated 3 weeks ago
- The complete sequence of a human genome☆954Updated 5 months ago
- A guided, intuitive introduction to genomics for software engineers. Curated by the community.☆368Updated 8 months ago
- Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures☆128Updated 2 years ago
- Web app for visualizing pathogen evolution☆300Updated this week
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆53Updated last week
- Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766☆81Updated 4 months ago
- NAalytics / Assemblies-of-putative-SARS-CoV2-spike-encoding-mRNA-sequences-for-vaccines-BNT-162b2-and-mRNA-1273RNA vaccines have become a key tool in moving forward through the challenges raised both in the current pandemic and in numerous other pu…☆3,366Updated 3 years ago
- Pipeline components for real-time phylodynamic analysis☆269Updated last week
- Text of government takedown notices as received. GitHub does not endorse or adopt any assertion contained in the following notices.☆3,119Updated last year
- Depth-weighted De-Mixing☆113Updated 2 weeks ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆33Updated this week
- ☆49Updated 3 years ago
- A tool for exploring large trees in the browser☆109Updated last month
- COVID-19 Biohackathon April 5-11 2020☆239Updated 4 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆181Updated this week
- Source code for JBrowse 2, a modern React-based genome browser☆234Updated this week