cov-lineages / pango-designationLinks
Repository for suggesting new lineages that should be added to the current scheme
☆1,068Updated this week
Alternatives and similar repositories for pango-designation
Users that are interested in pango-designation are comparing it to the libraries listed below
Sorting:
- Repository to propose and discuss lineages☆51Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆440Updated 2 months ago
- Informal summaries of notable SARS-CoV-2 lineages☆110Updated 2 weeks ago
- Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.☆320Updated last week
- ☆11Updated last year
- Nextstrain build for SARS-CoV-2☆1,353Updated 3 weeks ago
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆55Updated last week
- Raw nanopore signal mapper that enables real-time targeted sequencing☆527Updated last year
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆243Updated this week
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆348Updated 2 years ago
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- The complete sequence of a human genome☆986Updated last month
- Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766☆82Updated 3 months ago
- Web app for visualizing pathogen evolution☆302Updated this week
- A web platform to detect and analyze variants of SARS-CoV-2☆60Updated last week
- International SARS-CoV-2 surveillance☆36Updated 2 years ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆33Updated this week
- A guided, intuitive introduction to genomics for software engineers. Curated by the community.☆381Updated last year
- This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial…☆1,230Updated 2 years ago
- This is a one-off Nextstrain build for SARS-like coronaviruses☆81Updated 4 years ago
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆31Updated 2 months ago
- Ultrafast Sample Placement on Existing Trees☆133Updated this week
- Ultra-deep search for novel viruses☆273Updated 2 years ago
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Markdown version of Reverse Engineering the source code of the BioNTech/Pfizer SARS-CoV-2 Vaccine☆175Updated 3 years ago
- Depth-weighted De-Mixing☆119Updated this week
- Pipeline components for real-time phylodynamic analysis☆272Updated this week
- ☆74Updated last year
- Results from a model of global SARS-CoV-2 lineage competition☆39Updated 3 months ago
- NAalytics / Assemblies-of-putative-SARS-CoV2-spike-encoding-mRNA-sequences-for-vaccines-BNT-162b2-and-mRNA-1273RNA vaccines have become a key tool in moving forward through the challenges raised both in the current pandemic and in numerous other pu…☆3,361Updated 3 years ago