cov-lineages / pango-designation
Repository for suggesting new lineages that should be added to the current scheme
☆1,049Updated 2 weeks ago
Alternatives and similar repositories for pango-designation:
Users that are interested in pango-designation are comparing it to the libraries listed below
- Repository to propose and discuss lineages☆47Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆432Updated 2 months ago
- Informal summaries of notable SARS-CoV-2 lineages☆108Updated last month
- ☆11Updated 7 months ago
- 拍帮主的备份区☆219Updated 2 years ago
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- International SARS-CoV-2 surveillance☆36Updated last year
- Nextstrain build for SARS-CoV-2☆1,353Updated last week
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆52Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆227Updated this week
- Raw nanopore signal mapper that enables real-time targeted sequencing☆527Updated last year
- Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.☆320Updated last week
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated this week
- A web platform to detect and analyze variants of SARS-CoV-2☆61Updated 3 weeks ago
- ☆26Updated last year
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Updated last year
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States☆28Updated 8 months ago
- Results from a model of global SARS-CoV-2 lineage competition☆38Updated last month
- Web app for visualizing pathogen evolution☆300Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- 不再更新的专楼备份☆63Updated 2 years ago
- Depth-weighted De-Mixing☆109Updated this week
- Pipeline components for real-time phylodynamic analysis☆268Updated this week
- Fork of Facebooks LLaMa model to run on CPU☆773Updated 2 years ago
- Real-time tracking of influenza evolution☆88Updated last year
- A high-performance, Pythonic language for bioinformatics☆702Updated 2 years ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆33Updated this week
- ☆48Updated 3 years ago
- Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766☆81Updated 3 months ago
- Ultrafast Sample Placement on Existing Trees☆124Updated last month