galaxyproject / SARS-CoV-2Links
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
☆127Updated 2 years ago
Alternatives and similar repositories for SARS-CoV-2
Users that are interested in SARS-CoV-2 are comparing it to the libraries listed below
Sorting:
- Collection of scripts for automated SARS-CoV-2 genome surveillance.☆23Updated 2 years ago
- Utilities for building and managing bioconda recipes☆103Updated 2 weeks ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆96Updated 2 weeks ago
- A Python library for interacting with the Galaxy API☆95Updated last week
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated 3 weeks ago
- Galaxy Tool wrappers☆123Updated last week
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆108Updated last month
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 5 months ago
- ENA upload cli - script your Open Data upload to the European Nucleotide Archive☆28Updated last month
- ☆117Updated 2 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- ncbi-vdb☆92Updated this week
- Collect of SO Ontologies☆101Updated 2 months ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆385Updated 5 months ago
- Galaxy Workflows maintained by the Intergalactic Workflow Commission☆43Updated this week
- COVID-19 Biohackathon April 5-11 2020☆240Updated 5 years ago
- [THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble …☆195Updated last year
- Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.☆19Updated 3 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆194Updated 2 months ago
- Notebooks to introduce biopython☆140Updated 4 years ago
- NGS Language Bindings☆119Updated last year
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last month
- Ultra-deep search for novel viruses☆272Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated this week
- High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a ne…☆92Updated last week
- Modular BioJS compoment for a multiple sequence alignment☆173Updated 3 years ago
- ☆91Updated 6 years ago
- Docker Images tracking the stable Galaxy releases.☆234Updated 8 months ago
- Scrapping tool for GISAID data regarding SARS-CoV-2☆41Updated 2 years ago
- Language agnostic RESTful data access to Ensembl data over HTTP☆148Updated last month