ViReport analysis of COVID-19 using GISAID data
☆20Sep 20, 2020Updated 6 years ago
Alternatives and similar repositories for ViReport-COVID-19
Users that are interested in ViReport-COVID-19 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- High-throughput gene to knowledge mapping through massive integration of public sequencing data.☆31Feb 26, 2019Updated 7 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 3 years ago
- MESS: Moshiri Exam Similarity Score☆14Oct 18, 2024Updated last year
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆51Mar 11, 2022Updated 4 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆21May 4, 2026Updated 4 months ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 5 months ago
- 🛜 A lightweight immune repertoire browser☆28Dec 10, 2019Updated 6 years ago
- Funding schemes and travel grant opportunities for postdocs☆11Jun 2, 2018Updated 8 years ago
- A central platform for early career researchers☆11Jan 17, 2022Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomes☆72May 30, 2026Updated 3 months ago
- ☆38Jan 12, 2026Updated 8 months ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification☆15Sep 27, 2023Updated 3 years ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆20Sep 16, 2021Updated 5 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- An EWMH compliant X window title monitoring tool.☆11Jan 30, 2021Updated 5 years ago
- Test version of frechet☆14Mar 30, 2025Updated last year
- ☆18Apr 6, 2022Updated 4 years ago
- My teaching resources☆19May 26, 2026Updated 4 months ago
- Repository for source code of the Data Structures online textbook (Niema Moshiri and Liz Izhikevich, 2016)☆12Jan 28, 2019Updated 7 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Mar 21, 2023Updated 3 years ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- FAVITES (FrAmework for VIral Transmission and Evolution Simulation)☆40Nov 11, 2023Updated 2 years ago
- Model zoo for genomics☆175Dec 17, 2025Updated 9 months ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 4 years ago
- Deep learning in genomics☆20Jan 26, 2019Updated 7 years ago
- Identify a game using GameDB☆13May 23, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Mar 20, 2018Updated 8 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 10 months ago
- Demonstrating best practices for bioinformatics command line tools☆24Jun 2, 2026Updated 3 months ago
- ☆13May 13, 2024Updated 2 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆96Aug 29, 2022Updated 4 years ago
- How to distribute a Python package with data: https://stackoverflow.com/questions/3596979/manifest-in-ignored-on-python-setup-py-install-…☆14Dec 28, 2020Updated 5 years ago