hodcroftlab / covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
☆320Updated last week
Alternatives and similar repositories for covariants:
Users that are interested in covariants are comparing it to the libraries listed below
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆227Updated this week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆432Updated 2 months ago
- A versatile DNA sequence optimizer☆232Updated last month
- Pipeline components for real-time phylodynamic analysis☆268Updated this week
- A web platform to detect and analyze variants of SARS-CoV-2☆61Updated 3 weeks ago
- The Nextstrain website☆96Updated this week
- Web app for visualizing pathogen evolution☆300Updated this week
- Mpox 2022 repository☆174Updated last year
- 🧬 gget enables efficient querying of genomic reference databases☆1,010Updated this week
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆238Updated 2 weeks ago
- Store of the trained model for pangolin to access.☆55Updated 2 years ago
- Syntax highlighting for computational biology☆265Updated 2 years ago
- Pyro models of SARS-CoV-2 variants☆78Updated 8 months ago
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Updated last year
- Real-time tracking of influenza evolution☆88Updated last year
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆36Updated this week
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆117Updated last year
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆100Updated this week
- A tool for exploring large trees in the browser☆108Updated last week
- Gene cluster comparison figure generator☆560Updated 4 months ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆33Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- An Introduction to Applied Bioinformatics, 2nd Edition☆134Updated last year
- ☆48Updated 3 years ago
- World Mortality Dataset: international data on all-cause mortality.☆290Updated last week
- Unified biological sequence manipulation in Python☆208Updated 9 months ago
- COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions☆266Updated 9 months ago
- Ultrafast Sample Placement on Existing Trees☆124Updated last month
- Population genetics notes☆664Updated last year