Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
☆323Apr 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for covariants
Users that are interested in covariants are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextstrain build for novel coronavirus SARS-CoV-2☆11Jan 11, 2021Updated 5 years ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- ☆44Feb 13, 2026Updated 2 months ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆253Apr 25, 2026Updated last week
- Resources for calling and describing the circulating lineages of SARS-CoV-2☆38Apr 6, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated last month
- ☆20Apr 9, 2021Updated 5 years ago
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- A web platform to detect and analyze variants of SARS-CoV-2☆61Apr 22, 2026Updated last week
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆452Apr 7, 2026Updated 3 weeks ago
- Process consensus file for COG-UK data☆13Sep 7, 2021Updated 4 years ago
- A tool for exploring large trees in the browser☆131Apr 20, 2026Updated last week
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- The data API server for outbreak.info☆11Jan 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Apr 23, 2026Updated last week
- Helix® COVID-19 Surveillance☆16Apr 10, 2025Updated last year
- ☆51Mar 11, 2022Updated 4 years ago
- Pyro models of SARS-CoV-2 variants☆78Jul 26, 2024Updated last year
- Programmatically interact with the GISAID database.☆81Aug 5, 2025Updated 8 months ago
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆347Apr 12, 2023Updated 3 years ago
- Analysis and cuts of data from the team behind the Oxford COVID policy tracker☆34Jun 20, 2023Updated 2 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Apr 24, 2026Updated last week
- The Nextstrain website☆96Apr 15, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Reference-based consensus creation☆61Apr 24, 2026Updated last week
- SARS-CoV-2 workflow for nanopore sequence data☆42Apr 15, 2026Updated 2 weeks ago
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 4 months ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 5 months ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆31Updated this week
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Apr 18, 2026Updated 2 weeks ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Nov 8, 2023Updated 2 years ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,075Updated this week
- ASMNGS20 - 2020 Conference Details☆15Jun 10, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 7 months ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Depth-weighted De-Mixing☆132Updated this week
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆26Sep 18, 2023Updated 2 years ago
- SARS-CoV-2 genomics☆16Jun 20, 2025Updated 10 months ago