hodcroftlab / covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
☆316Updated 3 weeks ago
Related projects: ⓘ
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆425Updated last month
- Web app for visualizing pathogen evolution☆291Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆214Updated this week
- A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.☆344Updated last year
- A versatile DNA sequence optimizer☆218Updated 3 weeks ago
- COVID-19 Biohackathon April 5-11 2020☆238Updated 4 years ago
- Store of the trained model for pangolin to access.☆55Updated last year
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆50Updated last week
- Nextstrain build for novel coronavirus SARS-CoV-2☆1,351Updated this week
- Global phylogenies of SARS-CoV-2 sequences☆86Updated 10 months ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆584Updated last month
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆223Updated this week
- A web platform to detect and analyze variants of SARS-CoV-2☆60Updated last week
- Syntax highlighting for computational biology☆252Updated last year
- A tool for exploring very large trees in the browser☆98Updated 2 weeks ago
- Ultrafast Sample Placement on Existing Trees☆121Updated 3 months ago
- Ultra-deep search for novel viruses☆253Updated last year
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆206Updated this week
- Informal summaries of notable SARS-CoV-2 lineages☆105Updated 3 months ago
- Pipeline components for real-time phylodynamic analysis☆268Updated this week
- Interactive viewer of phylogenetic trees☆169Updated 5 months ago
- serious constellations of reoccurring phylogenetically-independent origin☆38Updated 11 months ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆175Updated last week
- Biopython Jupyter Notebook tutorial to characterize a small genome☆94Updated 4 years ago
- NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.☆349Updated last week
- Source code and data for The Economist's covid-19 excess deaths tracker☆641Updated this week
- Repository to propose and discuss lineages☆43Updated last month
- Automatically exported from code.google.com/p/figtree☆383Updated 5 months ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆168Updated last year
- A high-performance, Pythonic language for bioinformatics☆697Updated last year