Alternatives and similar repositories for nfcamp-tutorial:

Users that are interested in nfcamp-tutorial are comparing it to the libraries listed below

• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆34Updated last year
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated this week
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 4 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆45Updated this week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated last week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated this week
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 3 months ago
• BimberLab / DISCVRSeq
  A collection of command line tools for working with sequencing data
  ☆51Updated this week
• peterk87 / sublime-nextflow
  Nextflow workflow syntax highlighting and snippets for Sublime Text 4
  ☆24Updated 3 weeks ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 5 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated last month
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆57Updated this week
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated last month
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 4 months ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆20Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated 4 months ago
• s4hts / HTStream
  A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
  ☆49Updated 2 weeks ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆57Updated 3 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆73Updated last year
• billzt / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆48Updated 4 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆71Updated last month
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 8 months ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆30Updated last year
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 months ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆54Updated last year
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated 10 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated last month
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆34Updated this week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆92Updated 10 months ago