ncbi / GeneGPT

Related projects: ⓘ

• CelVoxes / ceLLama
  Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports
  ☆135Updated last week
• google-deepmind / alphamissense
  ☆493Updated 6 months ago
• HazyResearch / hyena-dna
  Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
  ☆567Updated 3 months ago
• jackievaleri / BioAutoMATED
  Automated machine learning for analyzing, interpreting, and designing biological sequences
  ☆164Updated last year
• Ligo-Biosciences / AlphaFold3
  Open source implementation of AlphaFold3
  ☆727Updated this week
• yiqunchen / GenePT
  ☆166Updated 6 months ago
• ncbi / datasets
  NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
  ☆349Updated last week
• stjude / learngenomics.dev
  A guided, intuitive introduction to genomics for software engineers. Curated by the community.
  ☆345Updated 3 weeks ago
• instadeepai / nucleotide-transformer
  🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
  ☆446Updated last month
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆183Updated this week
• biocypher / biocypher
  A unifying framework for biomedical research knowledge graphs
  ☆211Updated 3 weeks ago
• latchbio / latch
  a python bioinformatics framework
  ☆160Updated this week
• csbl-br / awesome-compbio-chatgpt
  An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
  ☆251Updated 5 months ago
• laminlabs / lamindb
  A data framework for biology.
  ☆121Updated this week
• pachterlab / gget
  🧬 gget enables efficient querying of genomic reference databases
  ☆921Updated this week
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆687Updated this week
• pachterlab / BI-BE-CS-183-2023
  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
  ☆396Updated 8 months ago
• evo-design / evo
  Biological foundation modeling from molecular to genome scale
  ☆925Updated 2 weeks ago
• bowang-lab / scGPT
  ☆983Updated last month
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆391Updated 3 months ago
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆246Updated 3 weeks ago
• pinellolab / CRISPResso2
  Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
  ☆268Updated this week
• pinellolab / DNA-Diffusion
  🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
  ☆358Updated this week
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆541Updated last month
• ML-Bioinfo-CEITEC / genomic_benchmarks
  Benchmarks for classification of genomic sequences
  ☆107Updated 7 months ago
• jmschrei / tangermeme
  Biological sequence analysis for the modern age.
  ☆169Updated 2 weeks ago
• sphinxbio / platechain
  LLMs for microplate data
  ☆41Updated 4 months ago
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆218Updated 3 weeks ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆188Updated last month
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆115Updated last year