Code and data for GeneGPT.
☆422May 8, 2025Updated 10 months ago
Alternatives and similar repositories for GeneGPT
Users that are interested in GeneGPT are comparing it to the libraries listed below
Sorting:
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated 11 months ago
- Command line scientific data management tool☆231Nov 4, 2024Updated last year
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated 2 months ago
- Per-base per-nucleotide depth analysis☆146Feb 4, 2026Updated last month
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated 9 months ago
- A tool to find sequencing data and metadata from public databases.☆596Aug 13, 2024Updated last year
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- Genomic Pre-trained Network☆326Feb 24, 2026Updated 2 weeks ago
- The code for gene set analysis by accessing domain databases☆98Dec 25, 2025Updated 2 months ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Mar 20, 2024Updated last year
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Unified biological sequence manipulation in Python☆208Jun 12, 2024Updated last year
- Backend library for conversational AI in biomedicine☆196Feb 26, 2026Updated last week
- vembrane filters VCF records using python expressions☆68Jan 8, 2026Updated 2 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,105Updated this week
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Jul 28, 2019Updated 6 years ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated last month
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Foundation Models for Genomics & Transcriptomics☆839Feb 24, 2026Updated last week
- Transfer coordinates across genomes☆23Feb 17, 2026Updated 2 weeks ago
- ☆310Mar 18, 2024Updated last year
- ☆32Jun 20, 2025Updated 8 months ago
- Biological foundation modeling from molecular to genome scale☆1,480Feb 16, 2026Updated 3 weeks ago
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 10 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Feb 26, 2026Updated last week
- A pairwise sequence aligner written in Rust☆151Jan 27, 2026Updated last month
- A place to put docker build files☆13Oct 3, 2023Updated 2 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Constructing a pangenome gene graph☆204Aug 11, 2025Updated 6 months ago
- Genome size estimation from long read overlaps☆81Mar 2, 2026Updated last week