ncbi / GeneGPTLinks
Code and data for GeneGPT.
☆418Updated 8 months ago
Alternatives and similar repositories for GeneGPT
Users that are interested in GeneGPT are comparing it to the libraries listed below
Sorting:
- Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports☆152Updated last year
- A unifying framework for biomedical research knowledge graphs☆284Updated this week
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆173Updated 2 years ago
- A guided, intuitive introduction to genomics for software engineers. Curated by the community.☆389Updated last year
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆355Updated last month
- An AI Agent for Fully Automated Multi-omic Analyses☆212Updated last year
- Repository for StripedHyena, a state-of-the-art beyond Transformer architecture☆409Updated last year
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆749Updated 9 months ago
- ☆605Updated last year
- The light frontend for BioChatter, in pure Python☆54Updated this week
- Biological foundation modeling from molecular to genome scale☆1,474Updated 2 months ago
- Open source implementation of AlphaFold3☆1,030Updated last year
- CRISPSR-GPT LLM Agent Public Welcome Page☆136Updated 5 months ago
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆287Updated 3 months ago
- ☆303Updated last year
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆314Updated 2 weeks ago
- a python bioinformatics framework☆169Updated last week
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆187Updated last month
- An awesome repository of community-curated applications of ChatGPT and other LLMs in computational biology☆267Updated last year
- RNA-seq prediction with deep convolutional neural networks.☆220Updated 4 months ago
- Backend library for conversational AI in biomedicine☆195Updated this week
- Genomic Pre-trained Network☆318Updated last week
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆458Updated last month
- ☆45Updated 9 months ago
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆82Updated last week
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆801Updated 2 months ago
- Explainable AI for Bioinformatics☆127Updated 2 years ago
- Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.☆103Updated 8 months ago
- A data framework for biology. One API: lakehouse, feature store, lineage, ontologies, LIMS, ELN.☆217Updated this week
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆284Updated 7 months ago