Code and data for GeneGPT.
☆428May 8, 2025Updated last year
Alternatives and similar repositories for GeneGPT
Users that are interested in GeneGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Nov 30, 2023Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 8 months ago
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago
- ☆320Mar 18, 2024Updated 2 years ago
- A tool to find sequencing data and metadata from public databases.☆604Aug 13, 2024Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆415Jan 5, 2026Updated 7 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- An AI Agent for Fully Automated Multi-omic Analyses☆236Nov 4, 2024Updated last year
- Genomic Pre-trained Network☆352Jul 25, 2026Updated 3 weeks ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,182Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆20Jun 13, 2022Updated 4 years ago
- The code for gene set analysis by accessing domain databases☆116Dec 25, 2025Updated 7 months ago
- Visualization and charting JS library for streaming genomic data☆19Dec 4, 2024Updated last year
- Backend library for conversational AI in biomedicine☆217Jul 31, 2026Updated 2 weeks ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Biomni: a general-purpose biomedical AI agent☆3,713Aug 10, 2026Updated last week
- A pipeline creation tool using Snakemake☆14Jul 24, 2026Updated 3 weeks ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆25Jul 29, 2026Updated 2 weeks ago
- Biological foundation modeling from molecular to genome scale☆1,555Mar 20, 2026Updated 4 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53May 19, 2025Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 6 months ago
- Foundation Models for Genomics & Transcriptomics☆907Feb 24, 2026Updated 5 months ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Updated this week
- Unified biological sequence manipulation in Python☆207Jun 12, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆288Jun 16, 2025Updated last year
- ☆4,487Jul 25, 2024Updated 2 years ago
- Linter rules for Nextflow DSL scripts☆34May 25, 2026Updated 2 months ago
- ☆13May 24, 2026Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆58Jul 14, 2026Updated last month
- ☆102Apr 22, 2024Updated 2 years ago