Alternatives and similar repositories for seqlike

Users that are interested in seqlike are comparing it to the libraries listed below

• Lattice-Automation / seqfold
  nucleic acid folding
  ☆108Updated 3 months ago
• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆221Updated 6 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆289Updated 5 months ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆206Updated 6 months ago
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆180Updated last week
• eternagame / draw_rna
  Draw RNA secondary structures in python.
  ☆49Updated 5 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 7 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆90Updated 3 weeks ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆209Updated last week
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• JBEI / ART
  A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
  ☆59Updated this week
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆55Updated 8 months ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆68Updated 4 years ago
• BIMSBbioinfo / janggu
  Deep learning infrastructure for genomics
  ☆257Updated 4 years ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆186Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last week
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆309Updated last month
• zaneveld / full_spectrum_bioinformatics
  An open-access bioinformatics text
  ☆124Updated last month
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆66Updated 2 years ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆99Updated last month
• eternagame / EternaFold
  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.
  ☆64Updated last year
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆213Updated 4 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆53Updated 2 months ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆169Updated 2 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆114Updated last week
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆256Updated last month