modernatx / seqlikeLinks
Unified biological sequence manipulation in Python
☆208Updated last year
Alternatives and similar repositories for seqlike
Users that are interested in seqlike are comparing it to the libraries listed below
Sorting:
- Deep networks for protein functional inference☆182Updated last week
- Software for the visualization of sequence-function relationships☆207Updated 2 weeks ago
- nucleic acid folding☆109Updated 5 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Updated 7 months ago
- Protein 3D structure prediction pipeline☆95Updated last week
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆214Updated this week
- Peptide-MHC I binding affinity prediction☆227Updated 7 months ago
- A versatile DNA sequence optimizer☆257Updated 2 months ago
- Protein structure comparison tools such as SSAP and SNAP☆67Updated 2 years ago
- Draw RNA secondary structures in python.☆49Updated 6 months ago
- Deep learning infrastructure for genomics☆257Updated 4 years ago
- WebLogo 3: Sequence Logos redrawn☆153Updated 3 weeks ago
- Tool for deep mutational scanning experiments.☆56Updated 10 months ago
- Evolutionary velocity with protein language models☆95Updated last month
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆217Updated last week
- A Python framework for structural systems biology☆110Updated 5 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 2 weeks ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 3 months ago
- Genomic Pre-trained Network☆318Updated this week
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- Evolutionary couplings from protein and RNA sequence alignments☆295Updated 2 months ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆64Updated 8 months ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆60Updated last month
- ☆85Updated 2 years ago
- An RNA manipulation library.☆56Updated last year
- A pipeline to build similarity maps of protein space☆40Updated 3 months ago
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago