Unified biological sequence manipulation in Python
☆208Jun 12, 2024Updated 2 years ago
Alternatives and similar repositories for seqlike
Users that are interested in seqlike are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Feb 17, 2023Updated 3 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,125Updated this week
- A tool to find sequencing data and metadata from public databases.☆599Aug 13, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 8 months ago
- genes and genomes at your fingertips☆413Mar 5, 2026Updated 3 months ago
- PyPEF – Pythonic Protein Engineering Framework☆26Sep 20, 2025Updated 8 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 9 months ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 3 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 6 months ago
- A versatile DNA sequence optimizer☆274Nov 5, 2025Updated 7 months ago
- A comprehensive library for computational molecular biology☆956May 27, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Biological sequence analysis for the modern age.☆287May 27, 2026Updated 2 weeks ago
- Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…☆37Feb 17, 2022Updated 4 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- Python library to plot DNA sequence features (e.g. from Genbank files)☆690Jul 2, 2025Updated 11 months ago
- An amino acid sequence annotator☆17May 15, 2025Updated last year
- Efficiently keep track of changes to genomes☆38Jul 22, 2024Updated last year
- Single-Cell RNA-seq pseudo-aligner☆52May 6, 2024Updated 2 years ago
- map Illumina metagenomes to genomes!☆39Jan 22, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- Per-base per-nucleotide depth analysis☆149May 9, 2026Updated last month
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated 2 years ago
- Parsing MHC nomenclature in the wild☆21May 13, 2026Updated last month
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Mar 20, 2026Updated 2 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MMseqs2: ultra fast and sensitive search and clustering suite☆2,078Updated this week
- ☆258Jul 31, 2024Updated last year
- Easily download genomes and build BLAST/Bowtie indexes in Python☆22Sep 30, 2022Updated 3 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- Lab notebook for people who like the command line.☆11Mar 6, 2026Updated 3 months ago