Alternatives and similar repositories for stabilized-ica

Users that are interested in stabilized-ica are comparing it to the libraries listed below

• sysbio-curie / transmorph
  Computational framework for dataset integration
  ☆11Updated 2 years ago
• theislab / moscot
  Multi-omic single-cell optimal transport tools
  ☆178Updated last week
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆58Updated last year
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 5 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆123Updated last year
• teekuningas / sparsecca
  Python implementations for Sparse CCA
  ☆19Updated 2 years ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆21Updated this week
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆61Updated 2 years ago
• HiDiHlabs / ssam
  ☆27Updated last year
• CellProfiling / subcell-embed
  Codebase for training the SubCell models
  ☆16Updated last week
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆102Updated this week
• flatironinstitute / st_gridnet
  A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…
  ☆25Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆42Updated 2 years ago
• Immunodynamics-Engel-Lab / msiflow
  collection of mass spectrometry imaging workflows
  ☆18Updated 5 months ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆129Updated 11 months ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆66Updated 9 months ago
• slowkow / harmonypy
  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
  ☆241Updated last year
• CamaraLab / CAJAL
  A Python package using Gromov-Wasserstein distance to compare cell shapes
  ☆21Updated 3 weeks ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated last year
• theislab / paperbee
  LLM-powered peronalised daily lists of scientific papers
  ☆74Updated last month
• causalbench / causalbench-starter
  Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.
  ☆31Updated 2 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆78Updated 3 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 4 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆48Updated 3 months ago
• scverse / pertpy
  Single-cell perturbation analysis
  ☆213Updated last week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆39Updated 3 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 8 months ago