Alternatives and similar repositories for elpigraph-python:

Users that are interested in elpigraph-python are comparing it to the libraries listed below

• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆27Updated 2 years ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆53Updated last week
• ShobiStassen / PARC
  ☆42Updated 7 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 3 months ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 6 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 8 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 10 months ago
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆26Updated 3 years ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• OleksiiR / cSTAR_Nature
  Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.
  ☆15Updated 2 years ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆16Updated last year
• iancovert / persist
  ☆16Updated 8 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated last week
• prabhakarlab / Banksy_py
  ☆45Updated 4 months ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• CamaraLab / scTDA
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
  ☆51Updated 6 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆44Updated 5 months ago
• auranic / Elastic-principal-graphs
  Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method
  ☆14Updated 2 years ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated last week
• rockdeme / chrysalis
  Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
  ☆16Updated 4 months ago
• CaiGroup / seqFISH-PLUS
  ☆50Updated 4 years ago
• scverse / spatialdata-io
  ☆56Updated last week
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 5 months ago
• HiDiHlabs / ssam
  ☆28Updated 5 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆30Updated 11 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆19Updated 2 years ago