Alternatives and similar repositories for elpigraph-python:

Users that are interested in elpigraph-python are comparing it to the libraries listed below

• auranic / Elastic-principal-graphs
  Matlab implementation of the Elastic Principal Graphs (ElPiGraph) method
  ☆14Updated 2 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 2 months ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated this week
• haotianteng / FICT
  FISH Iterative Cell Typing
  ☆11Updated 11 months ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• bioFAM / mofax
  Work with trained factor models in Python
  ☆31Updated 4 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆51Updated this week
• CaiGroup / seqFISH-PLUS
  ☆49Updated 3 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆26Updated 5 months ago
• ShobiStassen / PARC
  ☆42Updated 6 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 9 months ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆26Updated 2 years ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆43Updated 7 months ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆15Updated last year
• prabhakarlab / Banksy_py
  ☆41Updated 2 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated 10 months ago
• HiDiHlabs / ssam
  ☆27Updated 4 months ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated last month
• dylkot / scsim
  Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…
  ☆26Updated 3 years ago
• iancovert / persist
  ☆15Updated 7 months ago
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated last year
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆33Updated this week
• bioFAM / FISHFactor
  A probabilistic factor model for spatial transcriptomics data with subcellular resolution
  ☆23Updated last year
• chriscainx / mnnpy
  An implementation of MNN (Mutual Nearest Neighbors) correct in python.
  ☆73Updated 2 years ago
• WangPeng-Lab / scGCO
  Single-cell Graph Cuts Optimization
  ☆16Updated 10 months ago
• scverse / spatialdata-notebooks
  ☆42Updated this week
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆23Updated last year
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 3 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆75Updated last year