sysbio-curie / transmorphLinks
Computational framework for dataset integration
☆11Updated 2 years ago
Alternatives and similar repositories for transmorph
Users that are interested in transmorph are comparing it to the libraries listed below
Sorting:
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 4 months ago
- Spatial Single-Cell Analysis Toolkit☆103Updated 4 months ago
- Multi-omic single-cell optimal transport tools☆178Updated last week
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆241Updated last year
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆235Updated 3 weeks ago
- Flow & mass cytometry analytics.☆57Updated this week
- Single-cell perturbation analysis☆213Updated last week
- Subpopulation detection in high-dimensional single-cell data☆71Updated 5 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week
- ☆62Updated last week
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆24Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- ☆77Updated last week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- Batch balanced KNN☆175Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆48Updated 3 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆150Updated last year
- Learning cell communication from spatial graphs of cells☆114Updated last year
- spatial transcriptome, single cell☆71Updated 2 years ago
- ☆27Updated last year
- Multimodal Data (.h5mu) implementation for Python☆98Updated 3 weeks ago
- Static plotting for spatialdata☆71Updated this week
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆80Updated last week
- Nonnegative spatial factorization for multivariate count data☆61Updated 2 years ago
- 🏃 The go-to single-cell Foundation Model☆119Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated last week
- Unified knowledge-driven network inference from omics data☆87Updated 3 weeks ago