causalbench / causalbench-starterLinks
Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.
☆30Updated 2 years ago
Alternatives and similar repositories for causalbench-starter
Users that are interested in causalbench-starter are comparing it to the libraries listed below
Sorting:
- ☆63Updated last year
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆137Updated 7 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆100Updated 9 months ago
- ☆42Updated 7 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆113Updated 4 months ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆32Updated last month
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago
- Modeling complex perturbations with CellFlow☆49Updated this week
- Diffusion model for gene regulatory network inference.☆18Updated 2 months ago
- Models and datasets for perturbational single-cell omics☆152Updated 2 years ago
- ☆32Updated last month
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- A simulator for single-cell expression data guided by gene regulatory networks☆61Updated last year
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆19Updated 3 months ago
- Images and other data from the JUMP Cell Painting Consortium☆169Updated 3 months ago
- Simulating single-cell data using gene regulatory networks 📠☆73Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- Flow & mass cytometry analytics.☆50Updated this week
- ☆19Updated 2 years ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆28Updated 2 years ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆25Updated 2 months ago
- Scripts associated with the 2023 Open Problems competition☆11Updated last year
- External repo for the EFAAR benchmarking paper☆19Updated last week
- Drug Response Variational Autoencoder☆30Updated 6 years ago
- ☆79Updated 9 months ago
- Distributed single-cell data analysis.☆31Updated 3 weeks ago