Alternatives and similar repositories for maldi-learn

Users that are interested in maldi-learn are comparing it to the libraries listed below

• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated 2 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated last month
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated 2 years ago
• biocompibens / pySpacell
  A Python package for single-cell spatial image analysis.
  ☆18Updated 2 years ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• BorgwardtLab / maldi_amr
  Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
  ☆44Updated 3 years ago
• ratschlab / DeepSpot
  DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
  ☆55Updated this week
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆54Updated last year
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆29Updated 3 years ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆55Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• cantinilab / momix-notebook
  ☆67Updated last year
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆119Updated 11 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆55Updated 3 months ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆56Updated last year
• Henrik86 / Topological-tumour-graphs
  ☆11Updated 5 years ago
• scverse / spatialdata-notebooks
  ☆59Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 weeks ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated this week
• dpeerlab / PhenoGraph
  Subpopulation detection in high-dimensional single-cell data
  ☆71Updated 5 years ago
• zj-zhang / AMBER
  Automated Modelling for Biological Evidence-based Research
  ☆46Updated last year
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• Genentech / SIGnature
  SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …
  ☆22Updated 3 months ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆21Updated 7 months ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 5 months ago
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆22Updated 8 months ago