☆50Dec 29, 2022Updated 3 years ago
Alternatives and similar repositories for last-rna
Users that are interested in last-rna are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Jun 25, 2024Updated 2 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆124Sep 10, 2018Updated 7 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Nov 15, 2017Updated 8 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆183Jul 30, 2019Updated 6 years ago
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated 2 months ago
- Scripts related to building major-allele references for Bowtie and Bowtie 2☆13Jun 3, 2021Updated 5 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- ☆17Jan 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- ☆36Apr 17, 2025Updated last year
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆25Feb 24, 2026Updated 5 months ago
- ☆15Aug 6, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- ☆18Jun 3, 2020Updated 6 years ago
- Numerical Encoding for Human Genetic Variants☆43Jun 8, 2023Updated 3 years ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- ☆36Dec 6, 2017Updated 8 years ago
- An overview of all nanopack tools☆291Jun 2, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- ☆15Aug 1, 2021Updated 4 years ago
- ☆40Jul 3, 2025Updated last year
- A toolkit for de novo genome assembly based on Pregel.☆12Dec 16, 2019Updated 6 years ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- ☆15Apr 8, 2026Updated 3 months ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago