Create, modify and analyse phylogenetic trees in R
☆24Jun 26, 2026Updated last week
Alternatives and similar repositories for TreeTools
Users that are interested in TreeTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calculate distances between phylogenetic trees in R☆37Jun 10, 2026Updated 3 weeks ago
- R library for analyzing, time-scaling and simulating phylogenies of extinct/fossil lineages. Also plots diversity curves for stratigraphi…☆22Apr 1, 2026Updated 3 months ago
- Integrated Taxonomic Information Service (ITIS) R client☆16Feb 4, 2025Updated last year
- General Purpose Optimization in R using C++: provides a unified C++ wrapper to call functions of the algorithms underlying the optim() s…☆22Oct 2, 2025Updated 9 months ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Jun 19, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.☆22Aug 11, 2025Updated 10 months ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Materials accompanying the upstrap paper☆12Oct 19, 2020Updated 5 years ago
- [DEPRECATED] An R package to pre-process bulk EKG data and detect the physiological peaks☆12Aug 22, 2016Updated 9 years ago
- R package for Conditional Random Fields☆20Oct 22, 2025Updated 8 months ago
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- testing where SNP are in the humain genom☆13Oct 24, 2016Updated 9 years ago
- The core Mesquite repository☆111Jun 25, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆42Jan 3, 2026Updated 6 months ago
- An Interface to the AutoNavi Maps API Geocoding Services☆13Feb 10, 2026Updated 4 months ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- ☆16May 12, 2026Updated last month
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Oct 27, 2020Updated 5 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 7 months ago
- rim provides an interface to Maxima for R. Maxima is a powerful and fairly complete computer algebra system.☆13Nov 25, 2025Updated 7 months ago
- Correlation matrixes with ggplot2:☆15Sep 23, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 4 years ago
- Subplex Optimization Algorithm☆11Mar 23, 2026Updated 3 months ago
- Radiocarbon calibration command line tool and Haskell module☆11Jun 11, 2026Updated 3 weeks ago
- ☆15Dec 20, 2022Updated 3 years ago
- bibtex parser for R☆39Feb 2, 2026Updated 5 months ago
- An R package for tidyverse-friendly causal inference☆10Aug 2, 2019Updated 6 years ago
- ☆16May 8, 2023Updated 3 years ago
- Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes.☆15Feb 24, 2025Updated last year
- Measuring disparity with R☆29Jun 16, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- nlmixr2 estimation routines☆13Updated this week
- Tree hidden Markov model for learning epigenetic states in multiple cell types☆29Jul 11, 2013Updated 12 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 4 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Base R vs. Tidyverse: a cookbook☆10Jan 2, 2020Updated 6 years ago
- R Package - Rearrange scatter plot points on a regular grid☆52May 19, 2026Updated last month
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆18Jun 26, 2026Updated last week