mpg-age-bioinformatics / flaskiLinks
Get your science on a leash!
☆29Updated last month
Alternatives and similar repositories for flaski
Users that are interested in flaski are comparing it to the libraries listed below
Sorting:
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- Python wrapper around Nextflow.☆61Updated 2 months ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆25Updated 2 weeks ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Module for embedding igv.js in an IPython notebook☆80Updated 11 months ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- mtDNA Variant Caller☆35Updated last year
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated this week
- Monitor computational workflows in real time☆73Updated last year
- A python package and a set of shell commands to handle GTF files☆50Updated 3 weeks ago
- Simple web browser to visualize HiC tracks☆19Updated 6 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 7 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 8 months ago
- small rna-seq analysis package☆30Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- An interactive web-tool for RNA-seq analysis☆70Updated 3 weeks ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- Variant-aware CRISPR off-target nomination☆24Updated 2 weeks ago
- ☆36Updated 2 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated 3 weeks ago
- Sphinx documentation source for a computational genomics tutorial.☆36Updated 5 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated this week
- ☆32Updated 4 years ago
- Turn an existing conda environment into a Singularity container☆82Updated 3 years ago
- Dockerfile repository for Bioinformatics☆37Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago