igvteam / igv-notebookLinks
Module for embedding igv.js in an IPython notebook
☆78Updated 8 months ago
Alternatives and similar repositories for igv-notebook
Users that are interested in igv-notebook are comparing it to the libraries listed below
Sorting:
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- Frequently used commands in bioinformatics☆56Updated 11 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆86Updated 3 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated last week
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 3 months ago
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 10 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆116Updated last month
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆69Updated 3 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- liftover for python, made fast with cython☆89Updated 5 months ago
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆82Updated this week
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- Merging paired-end reads and removing adapters☆46Updated last week
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 11 months ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 6 months ago
- Reference genome resource manager☆74Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆31Updated 3 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆155Updated 3 weeks ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Ultraperformant reimplementation of SICER☆57Updated 4 years ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year