igvteam / igv-notebookLinks
Module for embedding igv.js in an IPython notebook
☆80Updated 10 months ago
Alternatives and similar repositories for igv-notebook
Users that are interested in igv-notebook are comparing it to the libraries listed below
Sorting:
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆98Updated this week
- Extract 3D contacts (.pairs) from sequencing alignments☆119Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆97Updated this week
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 5 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- Reference genome resource manager☆74Updated 2 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 3 months ago
- machine-readable file format for genomic library sequence and structure☆125Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 7 months ago
- liftover for python, made fast with cython☆93Updated last month
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Frequently used commands in bioinformatics☆58Updated last year
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated last month
- Merging paired-end reads and removing adapters☆46Updated last month
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Publication quality NGS track plotting☆116Updated 2 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- dcHiC: Differential compartment analysis for Hi-C datasets☆73Updated last year
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆75Updated 3 weeks ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆85Updated this week