Alternatives and similar repositories for igv-notebook

Users that are interested in igv-notebook are comparing it to the libraries listed below

• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆97Updated 2 weeks ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆99Updated 3 weeks ago
• open2c / pairtools
  Extract 3D contacts (.pairs) from sequencing alignments
  ☆123Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆64Updated 7 months ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆81Updated 10 months ago
• sbslee / fuc
  Frequently used commands in bioinformatics
  ☆58Updated last year
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆90Updated 2 months ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆33Updated last year
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 4 months ago
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 6 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆87Updated 2 weeks ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆126Updated 3 months ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 6 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last month
• jeremymcrae / liftover
  liftover for python, made fast with cython
  ☆94Updated 2 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆84Updated last year
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆117Updated 2 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 2 weeks ago
• HKU-BAL / ClairS-TO
  ClairS-TO - a deep-learning method for tumor-only somatic variant calling
  ☆76Updated last month
• open2c / coolpuppy
  A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
  ☆80Updated last year
• pwwang / vcfstats
  Powerful statistics for VCF files
  ☆73Updated last month
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆32Updated 4 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆146Updated 4 months ago
• brentp / bwa-meth
  fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
  ☆157Updated 4 months ago
• mortazavilab / TranscriptClean
  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
  ☆70Updated last year
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆78Updated last year
• epi2me-labs / wf-transcriptomes
  ☆109Updated last month
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆50Updated 2 years ago