Module for embedding igv.js in an IPython notebook
☆81Feb 7, 2025Updated last year
Alternatives and similar repositories for igv-notebook
Users that are interested in igv-notebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 5 years ago
- Extension for Jupyter which integrates igv.js☆154Jan 3, 2023Updated 3 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Genome browser hub for the T2T genomes and resources☆27Apr 7, 2026Updated 3 weeks ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15Mar 27, 2026Updated last month
- Align subreads to ccs reads☆14Jun 11, 2025Updated 10 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- ☆18Jan 29, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phased structural variant discovery in pangenomes☆42Apr 20, 2026Updated last week
- ☆10Jan 18, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆183Apr 12, 2024Updated 2 years ago
- Fast interval intersection library☆44Aug 20, 2025Updated 8 months ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆718Mar 20, 2026Updated last month
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆133Oct 14, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12Jan 25, 2026Updated 3 months ago
- Grep for FASTQ files☆104Mar 28, 2026Updated last month
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆410Apr 1, 2026Updated 3 weeks ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- PGR-TK: Pangenome Research Tool Kit☆22Apr 19, 2026Updated last week
- ☆11Dec 24, 2024Updated last year
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quickly calculate and visualize sequence coverage in alignment files☆100Jun 22, 2019Updated 6 years ago
- Genome browser and variant annotation☆392Apr 22, 2026Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 7 years ago
- bioinformatics toolkit in rust☆105Feb 15, 2026Updated 2 months ago
- Phased assembly variant caller☆139Dec 4, 2024Updated last year