Module for embedding igv.js in an IPython notebook
☆83Feb 7, 2025Updated last year
Alternatives and similar repositories for igv-notebook
Users that are interested in igv-notebook are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 5 years ago
- Extension for Jupyter which integrates igv.js☆154Jun 2, 2026Updated 2 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- ☆12May 13, 2025Updated last year
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆16Jul 10, 2026Updated last month
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phased structural variant discovery in pangenomes☆43Jul 27, 2026Updated 2 weeks ago
- ☆11Dec 24, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Fast interval intersection library☆45Jul 14, 2026Updated 3 weeks ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆732Aug 4, 2026Updated last week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Grep for FASTQ files☆104Jul 9, 2026Updated last month
- Genome browser hub for the T2T genomes and resources☆30Jul 27, 2026Updated 2 weeks ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆12May 10, 2026Updated 3 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 9 months ago
- This is a read-only mirror of the CRAN R package repository. GOplot — Visualization of Functional Analysis Data. Homepage: https://gith…☆15Mar 30, 2016Updated 10 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆436Jun 24, 2026Updated last month
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- PGR-TK: Pangenome Research Tool Kit☆23Apr 19, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Identification of structural variations☆12Jul 22, 2022Updated 4 years ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Jun 22, 2019Updated 7 years ago
- Genome browser and variant annotation☆397Jun 25, 2026Updated last month
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Jun 23, 2018Updated 8 years ago