SciDAS / nextflow-apiLinks
☆36Updated 2 years ago
Alternatives and similar repositories for nextflow-api
Users that are interested in nextflow-api are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Galaxy RNA workbench☆41Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Reference genome resource manager☆74Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- conda recipes for genomic data☆84Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- mtDNA Variant Caller☆35Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆78Updated 3 months ago
- List of IARC bioinformatics pipelines and resources☆56Updated 2 months ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated last week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆100Updated this week
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 3 weeks ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆104Updated 7 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- FusionInspector code☆59Updated 4 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- ☆82Updated 3 years ago
- Module for embedding igv.js in an IPython notebook☆80Updated 11 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago