SciDAS / nextflow-apiLinks
☆36Updated 2 years ago
Alternatives and similar repositories for nextflow-api
Users that are interested in nextflow-api are comparing it to the libraries listed below
Sorting:
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- A collection of reusable WDL tasks. Category:Other☆88Updated last month
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆101Updated this week
- conda recipes for genomic data☆84Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Workflows for converting between sequence data formats☆40Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Galaxy RNA workbench☆41Updated 5 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated last year
- TIDDIT - structural variant calling☆78Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 2 months ago
- Reference genome resource manager☆74Updated last month
- VariantGrid public repo☆24Updated this week
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 9 months ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 4 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆38Updated 2 weeks ago
- Demultiplexing pipeline for sequencing data☆52Updated last week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago