grst / containerize-condaLinks
Turn an existing conda environment into a Singularity container
☆81Updated 2 years ago
Alternatives and similar repositories for containerize-conda
Users that are interested in containerize-conda are comparing it to the libraries listed below
Sorting:
- NBIS/Elixir course: Tools for Reproducible Research☆64Updated last week
- Reference genome resource manager☆74Updated last year
- A rust framework to make using alevin-fry even simpler☆58Updated 6 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated last week
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- A proof of concept of RNAseq pipeline☆79Updated last week
- A short tutorial on getting started with Snakemake for workflow management☆55Updated 6 years ago
- Module for embedding igv.js in an IPython notebook☆78Updated 8 months ago
- A template for standard compliant snakemake-workflows☆116Updated 3 months ago
- Cookiecutter for snakemake slurm profile☆133Updated last year
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 11 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated last week
- Tip and tricks for BAM files☆86Updated 7 years ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- BigWig and BAM utilities☆98Updated last year
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- An interactive web-tool for RNA-seq analysis☆69Updated 8 months ago
- Merging paired-end reads and removing adapters☆46Updated last month
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- ☆34Updated last week
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆89Updated this week
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55Updated 2 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year