Alternatives and similar repositories for containerize-conda:

Users that are interested in containerize-conda are comparing it to the libraries listed below

• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆34Updated last week
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆95Updated last year
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆56Updated last year
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆56Updated 3 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆61Updated last year
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆114Updated 7 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆60Updated 3 weeks ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• smithlabcode / falco
  A C++ drop-in replacement of FastQC to assess the quality of sequence read data
  ☆110Updated 5 months ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆83Updated 3 months ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆77Updated last week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆111Updated 2 years ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 3 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆98Updated this week
• tavareshugo / tutorial_DESeq2_contrasts
  ☆59Updated 11 months ago
• ratan-lab / sumo
  Subtyping tool for multi-omic data
  ☆13Updated 2 years ago
• refresh-bio / SPLASH
  ☆77Updated 2 weeks ago
• BUStools / bustools
  Tools for working with BUS files
  ☆96Updated 6 months ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆74Updated 2 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆66Updated this week
• jwfoley / bioanalyzeR
  R tools for Agilent electrophoresis data
  ☆45Updated last year
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆112Updated 2 months ago
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆120Updated 3 weeks ago
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆65Updated this week
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆100Updated 5 months ago
• jokergoo / rGREAT
  GREAT Analysis - Functional Enrichment on Genomic Regions
  ☆87Updated last month
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆78Updated last week
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆101Updated 5 months ago
• sib-swiss / NGS-longreads-training
  ☆12Updated last month
• Roleren / ORFik
  ☆33Updated 3 weeks ago