Turn an existing conda environment into a Singularity container
☆83Dec 14, 2022Updated 3 years ago
Alternatives and similar repositories for containerize-conda
Users that are interested in containerize-conda are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Run Rstudio Server in a conda environment☆253Jun 12, 2024Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 3 months ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Nextflow language support for Visual Studio Editor☆38Jun 22, 2026Updated last week
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 2 months ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 9 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 5 months ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Feb 17, 2023Updated 3 years ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆30May 11, 2026Updated last month
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆55May 25, 2023Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆61Feb 15, 2024Updated 2 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 2 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆12Jun 20, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- tree-aggregated compositional analysis for high-throughput sequencing data☆11Aug 24, 2022Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Jun 13, 2024Updated 2 years ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated 2 years ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Apr 30, 2026Updated 2 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 2 months ago
- Data and workflow examples☆16Apr 9, 2018Updated 8 years ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- Python wrapper around Nextflow.☆62May 26, 2026Updated last month
- Ansible playbooks for Galaxy Server deployment☆24Oct 14, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Check strandedness of RNA-Seq fastq files☆131Aug 30, 2022Updated 3 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆247Jun 19, 2026Updated last week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆25Apr 30, 2026Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆85Jul 4, 2022Updated 3 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago