IBM / aligned_diffusion_bridges
Aligned Diffusion Schroedinger Bridges (UAI 2023)
☆11Updated last year
Related projects: ⓘ
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆38Updated last year
- protein backbone refinement☆11Updated last week
- The code for NeurIPS 2023 paper DSR☆10Updated 11 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆23Updated 6 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆52Updated 4 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆14Updated 7 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆26Updated 4 months ago
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆25Updated 9 months ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Updated 2 years ago
- ☆11Updated last year
- Public version for Distance-AF☆16Updated 5 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆44Updated 10 months ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆46Updated 2 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆22Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆27Updated 9 months ago
- [AAAI'24] DiSCO: Diffusion Schrödinger Bridge for Molecular Conformer Optimization☆9Updated last month
- ☆40Updated 11 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆50Updated 3 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆15Updated 2 months ago
- ☆25Updated 2 months ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆32Updated 2 months ago
- ☆23Updated 3 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆49Updated 7 months ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆24Updated last year
- ☆9Updated this week
- Implementation of Protein Invariant Point Packer (PIPPack)☆30Updated 3 months ago
- List of papers on protein binding site prediction☆11Updated last year
- Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.☆26Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆30Updated 3 months ago
- ☆12Updated 2 months ago