Alternatives and similar repositories for aligned_diffusion_bridges

Users that are interested in aligned_diffusion_bridges are comparing it to the libraries listed below

• DeepGraphLearning / SiamDiff
  Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
  ☆42Updated 2 years ago
• DanyeongLee / DiSCO
  [AAAI'24] DiSCO: Diffusion Schrödinger Bridge for Molecular Conformer Optimization
  ☆17Updated last year
• leojklarner / context-guided-diffusion
  Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  ☆39Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• bjing2016 / scalar-fields
  Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms
  ☆31Updated 2 years ago
• feiglab / idpgan
  ☆50Updated 11 months ago
• Sundw-818 / DSR
  The code for NeurIPS 2023 paper DSR
  ☆13Updated 2 years ago
• Minys233 / Dynaformer
  ☆33Updated last year
• BioinfoMachineLearning / GCPNet
  A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)
  ☆52Updated 7 months ago
• vsomnath / aligned_diffusion_bridges
  Aligned Diffusion Schroedinger Bridges (UAI 2023)
  ☆33Updated 2 years ago
• Vincentx15 / atomsurf
  ☆24Updated 3 weeks ago
• flagshippioneering / flash_ipa
  [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.
  ☆36Updated 3 weeks ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆73Updated 2 years ago
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated 2 years ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆57Updated last year
• blt2114 / twisted_diffusion_sampler
  Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training
  ☆46Updated last year
• qiangbo1222 / HierDiff
  Implementation of ICML2023 paper : Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D
  ☆50Updated 2 years ago
• johnyang101 / pmpnndiff
  Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion
  ☆18Updated last year
• thejonaslab / vonmises-icml-2023
  ☆10Updated 2 years ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year
• NVlabs / protcomposer
  ☆50Updated 4 months ago
• chao1224 / MoleculeSDE
  A Group Symmetric Stochastic Differential Equation Model for Molecule Multi-modal Pretraining, ICML'23
  ☆33Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆53Updated 5 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆52Updated last year
• Graylab / MaskedProteinEnT
  ☆12Updated last year
• cgoliver / rnaglib
  Toolkit for structure-based deep learning on RNA.
  ☆43Updated last month
• uhlerlab / InfoCORE
  Code for paper: "Removing Biases from Molecular Representations via Information Maximization"
  ☆20Updated last year
• shichence / ProtSeed
  Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"
  ☆24Updated 2 years ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆68Updated last year